{ "type": "genome", "identifier": "GCF_900637955.1", "organism": "Trueperella bialowiezensis", "title": "Trueperella bialowiezensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900637955.1", "bioproject": "PRJNA224116", "biosample": "SAMEA103924393", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "312285", "species_taxid": "312285", "organism_name": "Trueperella bialowiezensis", "infraspecific_name": "strain=NCTC13354", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/12/20", "asm_name": "54424_G02", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900637955.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/637/955/GCF_900637955.1_54424_G02", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2043249", "genome_size_ungapped": "2043249", "gc_percent": "59.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900637955.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "1864", "protein_coding_gene_count": "1804", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-12-20", "dateModified": "2018-12-20", "datePublished": "2018-12-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Trueperella bialowiezensis" ], "sample_taxid": [ "312285" ], "sample_host_organism": [ "not available" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.578 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2043249", "Number of Sequences": "1", "Longest Sequences (bp)": "2043249", "N50 (bp)": "2043249", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.6", "Number of CDSs": "1823", "Average Protein Length": "338.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "6", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Trueperella bialowiezensis", "strain": "strain=NCTC13354", "accession": "GCA_900637955.1", "taxid": 312285, "species_taxid": 312285, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 680, "total_fragments": 681, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Trueperella bernardiae", "strain": "strain=LCDC 89-0504", "accession": "GCA_001469025.1", "taxid": 59561, "species_taxid": 59561, "relation_to_type": "type", "validated": true, "ani": 78.1292, "matched_fragments": 195, "total_fragments": 681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trueperella pyogenes", "strain": "strain=DSM 20630", "accession": "GCA_014191445.1", "taxid": 1661, "species_taxid": 1661, "relation_to_type": "type", "validated": true, "ani": 77.8589, "matched_fragments": 140, "total_fragments": 681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trueperella pecoris", "strain": "strain=19M2397", "accession": "GCA_014926385.1", "taxid": 2733571, "species_taxid": 2733571, "relation_to_type": "type", "validated": true, "ani": 77.8337, "matched_fragments": 163, "total_fragments": 681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Trueperella pyogenes", "strain": "strain=NCTC5224", "accession": "GCA_900460345.1", "taxid": 1661, "species_taxid": 1661, "relation_to_type": "type", "validated": true, "ani": 77.8047, "matched_fragments": 152, "total_fragments": 681, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flaviflexus salsibiostraticola", "strain": "strain=KCTC 33148", "accession": "GCA_003952265.1", "taxid": 1282737, "species_taxid": 1282737, "relation_to_type": "type", "validated": true, "ani": 76.7064, "matched_fragments": 73, "total_fragments": 681, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637955.1", "gtdb_species": "s__Trueperella bialowiezensis", "ani": 100.0, "matched_fragments": 680, "total_fragments": 681, "gtdb_taxonomy": 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"d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Arcanobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.699, "cell_length": -0.523, "doubling_h": null, "growth_tmp": 36.875, "optimum_tmp": 37.0, "optimum_ph": 7.0, "genome_size": 2220183.588, "gc_content": 59.55, "coding_genes": 2013.778, "rRNA16S_genes": 1.667, "tRNA_genes": 46.143, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Trueperella", "bialowiezensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }