{ "type": "genome", "identifier": "GCF_900639835.1", "organism": "Legionella adelaidensis", "title": "Legionella adelaidensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900639835.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5198039", "wgs_master": "CAAAHS000000000.1", "refseq_category": "na", "taxid": "45056", "species_taxid": "45056", "organism_name": "Legionella adelaidensis", "infraspecific_name": "strain=1762-AUS-E", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/04", "asm_name": "Leg_adelaidensis_1762-AUS-E.v1", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_900639835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/639/835/GCF_900639835.1_Leg_adelaidensis_1762-AUS-E.v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2369410", "genome_size_ungapped": "2369208", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-17", "total_gene_count": "2253", "protein_coding_gene_count": "2190", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-04", "dateModified": "2019-02-04", "datePublished": "2019-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella adelaidensis" ], "sample_taxid": [ "45056" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.676 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2369410", "Number of Sequences": "35", "Longest Sequences (bp)": "327134", "N50 (bp)": "233241", "Gap Ratio (%)": "0.008990", "GCcontent (%)": "38.9", "Number of CDSs": "2184", "Average Protein Length": "325.1", "Coding Ratio (%)": "89.9", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella adelaidensis", "strain": "strain=1762-AUS-E", "accession": "GCA_900639835.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 778, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella adelaidensis", "strain": "strain=1762-AUS-E", "accession": "GCA_001467055.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 99.984, "matched_fragments": 773, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella adelaidensis", "strain": "strain=NCTC12735", "accession": "GCA_900637865.1", "taxid": 45056, "species_taxid": 45056, "relation_to_type": "type", "validated": true, "ani": 99.8979, "matched_fragments": 667, "total_fragments": 778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=ATCC 33761", "accession": "GCA_001648605.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.6172, "matched_fragments": 78, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=1725-Aus-E", "accession": "GCA_900640125.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 77.388, "matched_fragments": 61, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=ATCC 43878", "accession": "GCA_001467025.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 77.385, "matched_fragments": 65, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella brunensis", "strain": "strain=441-1", "accession": "GCA_900639795.1", "taxid": 29422, "species_taxid": 29422, "relation_to_type": "type", "validated": true, "ani": 77.3834, "matched_fragments": 65, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella oakridgensis", "strain": "strain=Oak Ridge-10", "accession": "GCA_001467925.1", "taxid": 29423, "species_taxid": 29423, "relation_to_type": "type", "validated": true, "ani": 77.3427, "matched_fragments": 73, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=ATCC 35300", "accession": "GCA_900167045.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 77.2104, "matched_fragments": 64, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=PX-1-G2-E2", "accession": "GCA_001467845.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 77.2066, "matched_fragments": 64, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_001467745.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 77.1863, "matched_fragments": 73, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 77.1746, "matched_fragments": 72, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella maceachernii", "strain": "strain=NCTC11982", "accession": "GCA_900460175.1", "taxid": 466, "species_taxid": 466, "relation_to_type": "type", "validated": true, "ani": 77.1689, "matched_fragments": 65, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella fairfieldensis", "strain": "strain=ATCC 49588", "accession": "GCA_000621525.1", "taxid": 45064, "species_taxid": 45064, "relation_to_type": "type", "validated": true, "ani": 77.0653, "matched_fragments": 64, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_900640205.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 77.0119, "matched_fragments": 73, "total_fragments": 778, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637865.1", "gtdb_species": "s__Legionella_A adelaidensis", "ani": 99.8979, "matched_fragments": 667, "total_fragments": 778, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_900639915.1", "gtdb_species": "s__Legionella_A nagasakiensis", "ani": 77.965, "matched_fragments": 66, "total_fragments": 778, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000512355.1", "gtdb_species": "s__Legionella_A oakridgensis", "ani": 77.6189, "matched_fragments": 79, "total_fragments": 778, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "adelaidensis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }