{
    "type": "genome",
    "identifier": "GCF_900639935.1",
    "organism": "Legionella nautarum",
    "title": "Legionella nautarum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INSTITUT PASTEUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900639935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5198056",
        "wgs_master": "CAAAIF000000000.1",
        "refseq_category": "na",
        "taxid": "45070",
        "species_taxid": "45070",
        "organism_name": "Legionella nautarum",
        "infraspecific_name": "strain=1224",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/04",
        "asm_name": "Leg_nautarum_1224.v1",
        "asm_submitter": "INSTITUT PASTEUR",
        "gbrs_paired_asm": "GCA_900639935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/639/935/GCF_900639935.1_Leg_nautarum_1224.v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3648718",
        "genome_size_ungapped": "3648646",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900639935.1-RS_2024_04_10",
        "annotation_date": "2024-04-10",
        "total_gene_count": "3223",
        "protein_coding_gene_count": "3126",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-04",
    "dateModified": "2019-02-04",
    "datePublished": "2019-02-04",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella nautarum"
        ],
        "sample_taxid": [
            "45070"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.040 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3648718",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "828034",
        "N50 (bp)": "193671",
        "Gap Ratio (%)": "0.001973",
        "GCcontent (%)": "39.6",
        "Number of CDSs": "3155",
        "Average Protein Length": "338.2",
        "Coding Ratio (%)": "87.7",
        "Number of rRNAs": "3",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Legionella nautarum",
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                "accession": "GCA_900639935.1",
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                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1194,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella nautarum",
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                "species_taxid": 45070,
                "relation_to_type": "type",
                "validated": true,
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                "total_fragments": 1194,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella drozanskii",
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                "species_taxid": 96228,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Legionella drozanskii",
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                "accession": "GCA_900640075.1",
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                "relation_to_type": "type",
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                "ani": 86.562,
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                "total_fragments": 1194,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tatlockia micdadei",
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                "accession": "GCA_900102325.1",
                "taxid": 451,
                "species_taxid": 451,
                "relation_to_type": "type",
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                "ani": 78.279,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella maceachernii",
                "strain": "strain=PX-1-G2-E2",
                "accession": "GCA_001467845.1",
                "taxid": 466,
                "species_taxid": 466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2559,
                "matched_fragments": 345,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella rowbothamii",
                "strain": "strain=LLAP6",
                "accession": "GCA_900639985.1",
                "taxid": 96229,
                "species_taxid": 96229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3959,
                "matched_fragments": 95,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_001467895.1",
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            },
            {
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001468005.1",
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}