{
    "type": "genome",
    "identifier": "GCF_900640075.1",
    "organism": "Legionella drozanskii LLAP-1",
    "title": "Legionella drozanskii LLAP-1",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INSTITUT PASTEUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900640075.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5198074",
        "wgs_master": "CAAAIU000000000.1",
        "refseq_category": "reference genome",
        "taxid": "1212489",
        "species_taxid": "96228",
        "organism_name": "Legionella drozanskii LLAP-1",
        "infraspecific_name": "strain=LLAP-1",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/02/12",
        "asm_name": "Leg_drozanskii_LLAP-1.v1",
        "asm_submitter": "INSTITUT PASTEUR",
        "gbrs_paired_asm": "GCA_900640075.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/640/075/GCF_900640075.1_Leg_drozanskii_LLAP-1.v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3558429",
        "genome_size_ungapped": "3558388",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "64",
        "contig_count": "64",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900640075.1-RS_2024_04_10",
        "annotation_date": "2024-04-10",
        "total_gene_count": "3225",
        "protein_coding_gene_count": "3126",
        "non_coding_gene_count": "49",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-02-12",
    "dateModified": "2019-02-12",
    "datePublished": "2019-02-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Legionella drozanskii LLAP-1"
        ],
        "sample_taxid": [
            "1212489"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.013 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3558388",
        "Number of Sequences": "64",
        "Longest Sequences (bp)": "500541",
        "N50 (bp)": "257586",
        "Gap Ratio (%)": "0.000028",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "3132",
        "Average Protein Length": "329.6",
        "Coding Ratio (%)": "87.0",
        "Number of rRNAs": "3",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Legionella drozanskii",
                "strain": "strain=LLAP-1",
                "accession": "GCA_900640075.1",
                "taxid": 96228,
                "species_taxid": 96228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1153,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella drozanskii",
                "strain": "strain=ATCC 700990",
                "accession": "GCA_001467585.1",
                "taxid": 96228,
                "species_taxid": 96228,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9693,
                "matched_fragments": 1146,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Legionella nautarum",
                "strain": "strain=1224",
                "accession": "GCA_900639935.1",
                "taxid": 45070,
                "species_taxid": 45070,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5642,
                "matched_fragments": 889,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella nautarum",
                "strain": "strain=ATCC 49506",
                "accession": "GCA_001467895.1",
                "taxid": 45070,
                "species_taxid": 45070,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5281,
                "matched_fragments": 902,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella maceachernii",
                "strain": "strain=PX-1-G2-E2",
                "accession": "GCA_001467845.1",
                "taxid": 466,
                "species_taxid": 466,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3565,
                "matched_fragments": 344,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tatlockia micdadei",
                "strain": "strain=ATCC 33218",
                "accession": "GCA_900102325.1",
                "taxid": 451,
                "species_taxid": 451,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3139,
                "matched_fragments": 361,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella massiliensis",
                "strain": "strain=LegA",
                "accession": "GCA_000756815.1",
                "taxid": 1034943,
                "species_taxid": 1034943,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9736,
                "matched_fragments": 215,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella lytica",
                "strain": "strain=PCM 2298",
                "accession": "GCA_023921225.1",
                "taxid": 96232,
                "species_taxid": 96232,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2762,
                "matched_fragments": 71,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Legionella rowbothamii",
                "strain": "strain=LLAP6",
                "accession": "GCA_900639985.1",
                "taxid": 96229,
                "species_taxid": 96229,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7425,
                "matched_fragments": 86,
                "total_fragments": 1155,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_001467585.1",
                "gtdb_species": "s__Tatlockia drozanskii",
                "ani": 99.9693,
                "matched_fragments": 1146,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.79",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001467895.1",
                "gtdb_species": "s__Tatlockia nautarum",
                "ani": 86.5243,
                "matched_fragments": 902,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000953635.1",
                "gtdb_species": "s__Tatlockia micdadei",
                "ani": 78.3929,
                "matched_fragments": 355,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.75",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_900167045.1",
                "gtdb_species": "s__Tatlockia maceachernii",
                "ani": 78.3213,
                "matched_fragments": 354,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000756815.1",
                "gtdb_species": "s__Tatlockia massiliensis",
                "ani": 77.9692,
                "matched_fragments": 216,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_013812775.1",
                "gtdb_species": "s__Tatlockia sp013812775",
                "ani": 77.8342,
                "matched_fragments": 165,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001467945.1",
                "gtdb_species": "s__Legionella parisiensis",
                "ani": 77.7896,
                "matched_fragments": 100,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900452385.1",
                "gtdb_species": "s__Tatlockia donaldsonii",
                "ani": 77.4611,
                "matched_fragments": 177,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001648595.1",
                "gtdb_species": "s__Legionella bozemanae",
                "ani": 77.2805,
                "matched_fragments": 92,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.47",
                "min_intra_species_ani": "97.91",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_016786215.1",
                "gtdb_species": "s__Legionella sp016786215",
                "ani": 77.2058,
                "matched_fragments": 93,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_014109805.1",
                "gtdb_species": "s__Legionella sp014109805",
                "ani": 77.088,
                "matched_fragments": 91,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001467525.1",
                "gtdb_species": "s__Legionella anisa",
                "ani": 76.8228,
                "matched_fragments": 99,
                "total_fragments": 1155,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.76",
                "min_intra_species_ani": "99.61",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.324,
        "cell_length": 0.259,
        "doubling_h": 0.38,
        "growth_tmp": 36.183,
        "optimum_tmp": 33.77,
        "optimum_ph": 6.9,
        "genome_size": 3482612.786,
        "gc_content": 38.268,
        "coding_genes": 2803.262,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 42.766,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.888,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Legionella",
        "drozanskii",
        "LLAP-1"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}