{ "tc_result": [ { "organism_name": "Legionella israelensis", "strain": "strain=Bercovier 4", "accession": "GCA_900640145.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 940, "total_fragments": 944, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella israelensis", "strain": "strain=NCTC12010", "accession": "GCA_900452605.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 99.9859, "matched_fragments": 944, "total_fragments": 944, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella israelensis", "strain": "strain=DSM 19235", "accession": "GCA_900101805.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 99.9854, "matched_fragments": 922, "total_fragments": 944, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella israelensis", "strain": "strain=Bercovier 4", "accession": "GCA_004571175.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 99.9844, "matched_fragments": 944, "total_fragments": 944, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella israelensis", "strain": "strain=Bercovier 4", "accession": "GCA_001467785.1", "taxid": 454, "species_taxid": 454, "relation_to_type": "type", "validated": true, "ani": 99.9613, "matched_fragments": 900, "total_fragments": 944, "ani_threshold": 95, "status": "conclusive" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004571175.1", "gtdb_species": "s__Legionella_D israelensis", "ani": 99.9844, "matched_fragments": 944, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.86", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_001467825.1", "gtdb_species": "s__Legionella_A londiniensis", "ani": 80.1862, "matched_fragments": 73, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900639915.1", "gtdb_species": "s__Legionella_A nagasakiensis", "ani": 78.5009, "matched_fragments": 87, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001468065.1", "gtdb_species": "s__Legionella steigerwaltii", "ani": 77.9406, "matched_fragments": 55, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900452415.1", "gtdb_species": "s__Legionella cincinnatiensis", "ani": 77.8032, "matched_fragments": 66, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.97", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000512355.1", "gtdb_species": "s__Legionella_A oakridgensis", "ani": 77.6831, "matched_fragments": 61, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.51", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001467625.1", "gtdb_species": "s__Tatlockia feeleii", "ani": 77.5583, "matched_fragments": 56, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_900637635.1", "gtdb_species": "s__Tatlockia jordanis", "ani": 77.4527, "matched_fragments": 72, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.59", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_001467955.1", "gtdb_species": "s__Legionella quateirensis", "ani": 77.2812, "matched_fragments": 75, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900452385.1", "gtdb_species": "s__Tatlockia donaldsonii", "ani": 77.2627, "matched_fragments": 62, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000586315.1", "gtdb_species": "s__Legionella fraseri", "ani": 77.2485, "matched_fragments": 64, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "96.27", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 43, "status": "-" }, { "accession": "GCF_000621525.1", "gtdb_species": "s__Tatlockia fairfieldensis", "ani": 77.1905, "matched_fragments": 69, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016786215.1", "gtdb_species": "s__Legionella sp016786215", "ani": 76.9351, "matched_fragments": 72, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.95", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900637585.1", "gtdb_species": "s__Legionella pascullei", "ani": 76.9336, "matched_fragments": 66, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.72", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000008485.1", "gtdb_species": "s__Legionella pneumophila", "ani": 76.8706, "matched_fragments": 69, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.85", "min_intra_species_ani": "95.56", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.84", "num_clustered_genomes": 789, "status": "-" }, { "accession": "GCF_000953135.1", "gtdb_species": "s__Legionella fallonii", "ani": 76.7921, "matched_fragments": 66, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013697725.1", "gtdb_species": "s__Tatlockia sp013697725", "ani": 76.642, "matched_fragments": 54, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001467535.1", "gtdb_species": "s__Legionella worsleiensis", "ani": 76.6263, "matched_fragments": 60, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000423305.1", "gtdb_species": "s__Legionella moravica", "ani": 76.5664, "matched_fragments": 65, "total_fragments": 944, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.09", "min_intra_species_ani": "96.46", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.86", "num_clustered_genomes": 5, "status": "-" } ] }