{ "type": "genome", "identifier": "GCF_900659625.1", "organism": "Actinomadura formosensis", "title": "Actinomadura formosensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900659625.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5209066", "wgs_master": "CAACUZ000000000.1", "refseq_category": "reference genome", "taxid": "60706", "species_taxid": "60706", "organism_name": "Actinomadura formosensis", "infraspecific_name": "na", "isolate": "LMG 29178", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/05", "asm_name": "LMG29178_FinalContigs.fasta.gz", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_900659625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/659/625/GCF_900659625.1_LMG29178_FinalContigs.fasta.gz", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7124672", "genome_size_ungapped": "7124672", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "177", "contig_count": "177", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900659625.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "6745", "protein_coding_gene_count": "6551", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-05", "dateModified": "2019-02-05", "datePublished": "2019-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura formosensis" ], "sample_taxid": [ "60706" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"validated": true, "ani": 83.8954, "matched_fragments": 1465, "total_fragments": 2289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 81.563, "matched_fragments": 1287, "total_fragments": 2289, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 81.3481, "matched_fragments": 1278, "total_fragments": 2289, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001552155.1", "gtdb_species": "s__Spirillospora formosensis", "ani": 99.9495, 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