{ "type": "genome", "identifier": "GCF_900659635.1", "organism": "Actinomadura roseirufa", "title": "Actinomadura roseirufa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900659635.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5209064", "wgs_master": "CAACVB000000000.1", "refseq_category": "reference genome", "taxid": "2094049", "species_taxid": "2094049", "organism_name": "Actinomadura roseirufa", "infraspecific_name": "na", "isolate": "LMG 30035", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/02/05", "asm_name": "LMG30035_FinalContigs.fasta.gz", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_900659635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/659/635/GCF_900659635.1_LMG30035_FinalContigs.fasta.gz", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9034239", "genome_size_ungapped": "9034239", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "603", "contig_count": "603", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900659635.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "8483", "protein_coding_gene_count": "8144", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-02-05", "dateModified": "2019-02-05", "datePublished": "2019-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinomadura roseirufa" ], "sample_taxid": [ "2094049" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], 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"strain": "strain=NBRC 14102", "accession": "GCA_001552215.1", "taxid": 46164, "species_taxid": 46164, "relation_to_type": "type", "validated": true, "ani": 84.3555, "matched_fragments": 1646, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura physcomitrii", "strain": "strain=LD22", "accession": "GCA_008923205.2", "taxid": 2650748, "species_taxid": 2650748, "relation_to_type": "type", "validated": true, "ani": 83.7216, "matched_fragments": 1507, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura montaniterrae", "strain": "strain=CYP1-1B", "accession": "GCA_008923365.1", "taxid": 1803903, "species_taxid": 1803903, "relation_to_type": "type", "validated": true, "ani": 83.6091, "matched_fragments": 1588, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura latina", "strain": "strain=ATCC BAA-277", "accession": "GCA_012396395.1", "taxid": 163603, "species_taxid": 163603, "relation_to_type": "type", "validated": true, "ani": 83.6031, "matched_fragments": 1369, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura formosensis", "strain": "strain=NBRC 14204", "accession": "GCA_001552155.1", "taxid": 60706, "species_taxid": 60706, "relation_to_type": "type", "validated": true, "ani": 83.5511, "matched_fragments": 1236, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura bangladeshensis", "strain": "strain=DSM 45347", "accession": "GCA_004348335.1", "taxid": 453573, "species_taxid": 453573, "relation_to_type": "type", "validated": true, "ani": 83.4953, "matched_fragments": 1335, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura mexicana", "strain": "strain=DSM 44485", "accession": "GCA_900188105.1", "taxid": 134959, 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"matched_fragments": 1361, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura parmotrematis", "strain": "strain=PM05-2", "accession": "GCA_019458805.1", "taxid": 2864039, "species_taxid": 2864039, "relation_to_type": "type", "validated": true, "ani": 81.3698, "matched_fragments": 1343, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinomadura rupiterrae", "strain": "strain=DSM 45251", "accession": "GCA_024172125.1", "taxid": 559627, "species_taxid": 559627, "relation_to_type": "type", "validated": true, "ani": 80.8981, "matched_fragments": 1339, "total_fragments": 2713, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 12.04, "strain_heterogeneity": 61.54 }, "gtdb_result": [ { "accession": "GCF_900659635.1", "gtdb_species": "s__Spirillospora roseirufa", "ani": 100.0, "matched_fragments": 2682, "total_fragments": 2713, 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