{
    "type": "genome",
    "identifier": "GCF_900660185.1",
    "organism": "Thomasclavelia ramosa",
    "title": "Thomasclavelia ramosa",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CHUV-UNIL",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900660185.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5229590",
        "wgs_master": "CAACVM000000000.1",
        "refseq_category": "na",
        "taxid": "1547",
        "species_taxid": "1547",
        "organism_name": "Thomasclavelia ramosa",
        "infraspecific_name": "na",
        "isolate": "CHUV1985",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/03/01",
        "asm_name": "E_ramosum_CHUV1985.1",
        "asm_submitter": "CHUV-UNIL",
        "gbrs_paired_asm": "GCA_900660185.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/660/185/GCF_900660185.1_E_ramosum_CHUV1985.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3458191",
        "genome_size_ungapped": "3458191",
        "gc_percent": "31.000000",
        "replicon_count": "0",
        "scaffold_count": "65",
        "contig_count": "65",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-06",
        "total_gene_count": "3379",
        "protein_coding_gene_count": "3262",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-03-01",
    "dateModified": "2019-03-01",
    "datePublished": "2019-03-01",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thomasclavelia ramosa"
        ],
        "sample_taxid": [
            "1547"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "diseased"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.959 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3458191",
        "Number of Sequences": "65",
        "Longest Sequences (bp)": "345812",
        "N50 (bp)": "123564",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "31.2",
        "Number of CDSs": "3311",
        "Average Protein Length": "304.7",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "5",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "",
                "accession": "GCA_900660185.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1123,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "strain=DSM 1402",
                "accession": "GCA_014131695.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.7304,
                "matched_fragments": 1024,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "strain=DSM 1402",
                "accession": "GCA_000154485.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6757,
                "matched_fragments": 1025,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Erysipelatoclostridium ramosum",
                "strain": "strain=FDAARGOS_906",
                "accession": "GCA_016027135.1",
                "taxid": 1547,
                "species_taxid": 1547,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.6488,
                "matched_fragments": 1028,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Clostridium] cocleatum",
                "strain": "strain=I50",
                "accession": "GCA_010206155.1",
                "taxid": 69824,
                "species_taxid": 69824,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.116,
                "matched_fragments": 455,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] spiroforme",
                "strain": "strain=DSM 1552",
                "accession": "GCA_025149465.1",
                "taxid": 29348,
                "species_taxid": 29348,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.232,
                "matched_fragments": 395,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "[Clostridium] spiroforme",
                "strain": "strain=DSM 1552",
                "accession": "GCA_000154805.1",
                "taxid": 29348,
                "species_taxid": 29348,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1841,
                "matched_fragments": 395,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_024622235.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6918,
                "matched_fragments": 234,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Longibaculum muris",
                "strain": "strain=DSM 29487",
                "accession": "GCA_004343035.1",
                "taxid": 1796628,
                "species_taxid": 1796628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6599,
                "matched_fragments": 237,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Tannockella kyphosi",
                "strain": "strain=BP52G",
                "accession": "GCA_021054785.1",
                "taxid": 2899121,
                "species_taxid": 2899121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6327,
                "matched_fragments": 148,
                "total_fragments": 1124,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014131695.1",
                "gtdb_species": "s__Erysipelatoclostridium ramosum",
                "ani": 99.7304,
                "matched_fragments": 1024,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.66",
                "min_intra_species_ani": "99.35",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 70,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900102365.1",
                "gtdb_species": "s__Erysipelatoclostridium cocleatum",
                "ani": 81.1298,
                "matched_fragments": 439,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.07",
                "min_intra_species_ani": "98.04",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_000686665.1",
                "gtdb_species": "s__Erysipelatoclostridium saccharogumia",
                "ani": 80.4534,
                "matched_fragments": 435,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_018369555.1",
                "gtdb_species": "s__Erysipelatoclostridium spiroforme_A",
                "ani": 80.3703,
                "matched_fragments": 356,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_000508865.1",
                "gtdb_species": "s__Erysipelatoclostridium sp000508865",
                "ani": 80.3199,
                "matched_fragments": 427,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000154805.1",
                "gtdb_species": "s__Erysipelatoclostridium spiroforme",
                "ani": 80.1976,
                "matched_fragments": 394,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
                "min_intra_species_ani": "96.38",
                "mean_intra_species_af": "0.84",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_002160495.1",
                "gtdb_species": "s__Erysipelatoclostridium merdavium",
                "ani": 80.1037,
                "matched_fragments": 426,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Erysipelatoclostridium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.70",
                "min_intra_species_ani": "98.24",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003480255.1",
                "gtdb_species": "s__Faecalibacillus sp003480255",
                "ani": 78.7182,
                "matched_fragments": 225,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Faecalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "98.20",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_900538465.1",
                "gtdb_species": "s__Longibaculum sp900538465",
                "ani": 77.8828,
                "matched_fragments": 181,
                "total_fragments": 1124,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Erysipelotrichales;f__Coprobacillaceae;g__Longibaculum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Thomasclavelia",
        "ramosa"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}