{ "type": "genome", "identifier": "GCF_900660495.1", "organism": "Mycoplasmopsis gallinacea", "title": "Mycoplasmopsis gallinacea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900660495.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4412701", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "29556", "species_taxid": "29556", "organism_name": "Mycoplasmopsis gallinacea", "infraspecific_name": "strain=NCTC10183", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "50648_F01-3", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900660495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/660/495/GCF_900660495.1_50648_F01-3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1074838", "genome_size_ungapped": "1074838", "gc_percent": "28.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900660495.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "836", "protein_coding_gene_count": "777", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycoplasmopsis gallinacea" ], "sample_taxid": [ "29556" ], "sample_host_organism": [ "Bird (Chicken)" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.287 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1074838", "Number of Sequences": "1", "Longest Sequences (bp)": "1074838", "N50 (bp)": "1074838", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "28.7", "Number of CDSs": "1586", "Average Protein Length": "146.3", "Coding Ratio (%)": "64.8", "Number of rRNAs": "9", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycoplasmopsis gallinacea", "strain": "strain=NCTC10183", "accession": "GCA_900660495.1", "taxid": 29556, "species_taxid": 29556, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 354, "total_fragments": 358, "ani_threshold": 95, 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"Mycoplasmopsis bovirhinis", "strain": "strain=NCTC10118", "accession": "GCA_900660515.1", "taxid": 29553, "species_taxid": 29553, "relation_to_type": "type", "validated": true, "ani": 78.861, "matched_fragments": 56, "total_fragments": 358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis cynos", "strain": "strain=NCTC10142", "accession": "GCA_900660545.1", "taxid": 171284, "species_taxid": 171284, "relation_to_type": "type", "validated": true, "ani": 78.2856, "matched_fragments": 55, "total_fragments": 358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis citelli", "strain": "strain=RG-2C", "accession": "GCA_024498235.1", "taxid": 171281, "species_taxid": 171281, "relation_to_type": "type", "validated": true, "ani": 78.1016, "matched_fragments": 76, "total_fragments": 358, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis citelli", "strain": "strain=NCTC10181", 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