{ "type": "genome", "identifier": "GCF_900660585.1", "organism": "Mycoplasmopsis canis", "title": "Mycoplasmopsis canis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "SC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900660585.1", "bioproject": "PRJNA224116", "biosample": "SAMEA4434530", "wgs_master": "na", "refseq_category": "na", "taxid": "29555", "species_taxid": "29555", "organism_name": "Mycoplasmopsis canis", "infraspecific_name": "strain=NCTC10146", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/01/29", "asm_name": "51342_E01-3", "asm_submitter": "SC", "gbrs_paired_asm": "GCA_900660585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/660/585/GCF_900660585.1_51342_E01-3", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "996787", "genome_size_ungapped": "996787", "gc_percent": "27.500000", "replicon_count": "12", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-26", "total_gene_count": "817", "protein_coding_gene_count": "753", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-01-29", "dateModified": "2019-01-29", "datePublished": "2019-01-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycoplasmopsis canis" ], "sample_taxid": [ "29555" ], "sample_host_organism": [ "canine" ], "sample_host_organism_id": [], "sample_host_disease": [ "not available: to be reported later" ], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "996787", "Number of Sequences": "12", "Longest Sequences (bp)": "898204", "N50 (bp)": "898204", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.3", "Number of CDSs": "1495", "Average Protein Length": "148.5", "Coding Ratio (%)": "66.8", "Number of rRNAs": "10", "Number of tRNAs": "32", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycoplasmopsis canis", "strain": "strain=NCTC10146", "accession": "GCA_900660585.1", "taxid": 29555, "species_taxid": 29555, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 324, "total_fragments": 326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycoplasmopsis canis", "strain": "strain=PG 14", "accession": "GCA_001553195.1", "taxid": 29555, "species_taxid": 29555, "relation_to_type": "type", "validated": true, "ani": 99.9936, "matched_fragments": 295, "total_fragments": 326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycoplasmopsis canis", "strain": "strain=PG 14", "accession": "GCA_000258925.1", "taxid": 29555, "species_taxid": 29555, "relation_to_type": "type", "validated": true, "ani": 99.6271, "matched_fragments": 278, "total_fragments": 326, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycoplasmopsis edwardii", "strain": "strain=NCTC10132", "accession": "GCA_900476105.1", "taxid": 53558, "species_taxid": 53558, "relation_to_type": "type", "validated": true, "ani": 82.6917, "matched_fragments": 139, "total_fragments": 326, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycoplasmopsis cynos", "strain": 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