{ "type": "genome", "identifier": "GCF_900696085.1", "organism": "Bradyrhizobium ivorense", "title": "Bradyrhizobium ivorense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_900696085.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5315725", "wgs_master": "CAADFC000000000.2", "refseq_category": "reference genome", "taxid": "2511166", "species_taxid": "2511166", "organism_name": "Bradyrhizobium ivorense", "infraspecific_name": "strain=CI-1B", "isolate": "CI-1B", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/12", "asm_name": "ERZ807199", "asm_submitter": "Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences", "gbrs_paired_asm": "GCA_900696085.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/696/085/GCF_900696085.1_ERZ807199", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9412302", "genome_size_ungapped": "9412302", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_900696085.1-RS_2024_05_26", "annotation_date": "2024-05-26", "total_gene_count": "8651", "protein_coding_gene_count": "8429", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-12", "dateModified": "2019-06-12", "datePublished": "2019-06-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium ivorense" ], "sample_taxid": [ "2511166" ], "sample_host_organism": [ "Cajanus cajan" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cote d'Ivoire" ], "sample_host_location_id": [], "data_size": "2.596 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9412302", "Number of Sequences": "44", "Longest Sequences (bp)": "1742598", "N50 (bp)": "466280", "Gap Ratio (%)": "0.000106", "GCcontent (%)": "64.2", "Number of CDSs": "8636", "Average Protein Length": "304.9", "Coding Ratio (%)": "83.9", "Number of rRNAs": "3", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium ivorense", 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"relation_to_type": "type", "validated": true, "ani": 87.948, "matched_fragments": 2096, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium quebecense", "strain": "strain=66S1MB, /ecotype=symbiovar septentrionalis", "accession": "GCA_013373795.3", "taxid": 2748629, "species_taxid": 2748629, "relation_to_type": "type", "validated": true, "ani": 87.8655, "matched_fragments": 2017, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium altum", "strain": "strain=Pear77", "accession": "GCA_020889705.1", "taxid": 1571202, "species_taxid": 1571202, "relation_to_type": "type", "validated": true, "ani": 87.8255, "matched_fragments": 1913, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 87.7561, "matched_fragments": 1907, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium tropiciagri", "strain": "strain=SEMIA 6148", "accession": "GCA_001189845.1", "taxid": 312253, "species_taxid": 312253, "relation_to_type": "type", "validated": true, "ani": 87.7528, "matched_fragments": 2082, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium embrapense", "strain": "strain=SEMIA 6208", "accession": "GCA_001189235.2", "taxid": 630921, "species_taxid": 630921, "relation_to_type": "type", "validated": true, "ani": 87.6721, "matched_fragments": 2017, "total_fragments": 3112, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", 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