{
    "type": "genome",
    "identifier": "GCF_900978195.1",
    "organism": "Klebsiella variicola",
    "title": "Klebsiella variicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900978195.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4425280",
        "wgs_master": "CAAHGE000000000.1",
        "refseq_category": "na",
        "taxid": "244366",
        "species_taxid": "244366",
        "organism_name": "Klebsiella variicola",
        "infraspecific_name": "strain=F2R9T",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/11",
        "asm_name": "F2R9.1",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_900978195.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/978/195/GCF_900978195.1_F2R9.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5470009",
        "genome_size_ungapped": "5470009",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "82",
        "contig_count": "82",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900978195.1-RS_2024_11_26",
        "annotation_date": "2024-11-26",
        "total_gene_count": "5341",
        "protein_coding_gene_count": "5133",
        "non_coding_gene_count": "99",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-11",
    "dateModified": "2019-04-11",
    "datePublished": "2019-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Klebsiella variicola"
        ],
        "sample_taxid": [
            "244366"
        ],
        "sample_host_organism": [
            "Banana"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Mexico"
        ],
        "sample_host_location_id": [],
        "data_size": "1.544 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5470009",
        "Number of Sequences": "82",
        "Longest Sequences (bp)": "501181",
        "N50 (bp)": "206214",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.6",
        "Number of CDSs": "5090",
        "Average Protein Length": "315.0",
        "Coding Ratio (%)": "87.9",
        "Number of rRNAs": "10",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Klebsiella variicola",
                "strain": "strain=type strain: F2R9",
                "accession": "GCA_900978195.1",
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                "species_taxid": 244366,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
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                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Klebsiella variicola subsp. variicola",
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                "accession": "GCA_020525545.1",
                "taxid": 2590157,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9983,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Klebsiella variicola",
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            },
            {
                "organism_name": "Klebsiella variicola",
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                "species_taxid": 244366,
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                "validated": true,
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                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Klebsiella variicola",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9924,
                "matched_fragments": 1769,
                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
                "strain": "strain=PartO-Kpneumoniae-RM8376",
                "accession": "GCA_022869665.1",
                "taxid": 573,
                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.7553,
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                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0136,
                "matched_fragments": 925,
                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 938,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7565,
                "matched_fragments": 910,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter cloacae",
                "strain": "strain=DSM 30054",
                "accession": "GCA_021469225.1",
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                "species_taxid": 550,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 917,
                "total_fragments": 1788,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
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        "gtdb_result": [
            {
                "accession": "GCF_000828055.2",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "96.87",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 528,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000742135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
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                "status": "-"
            },
            {
                "accession": "GCF_900978845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
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            },
            {
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            },
            {
                "accession": "GCF_000215745.1",
                "gtdb_species": "s__Klebsiella aerogenes",
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Kluyvera",
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                "mean_intra_species_ani": "98.12",
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                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.155,
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        "growth_tmp": 29.5,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "variicola"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}