{
    "type": "genome",
    "identifier": "GCF_900978845.1",
    "organism": "Klebsiella africana",
    "title": "Klebsiella africana",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_900978845.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA4969318",
        "wgs_master": "CAAHGQ000000000.1",
        "refseq_category": "na",
        "taxid": "2489010",
        "species_taxid": "2489010",
        "organism_name": "Klebsiella africana",
        "infraspecific_name": "strain=SB5857",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/04/11",
        "asm_name": "200023.1",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_900978845.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/900/978/845/GCF_900978845.1_200023.1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5156720",
        "genome_size_ungapped": "5156720",
        "gc_percent": "57.500000",
        "replicon_count": "0",
        "scaffold_count": "50",
        "contig_count": "50",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_900978845.1-RS_2024_04_25",
        "annotation_date": "2024-04-25",
        "total_gene_count": "4966",
        "protein_coding_gene_count": "4782",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-04-11",
    "dateModified": "2019-04-11",
    "datePublished": "2019-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Klebsiella africana"
        ],
        "sample_taxid": [
            "2489010"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.458 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5156720",
        "Number of Sequences": "50",
        "Longest Sequences (bp)": "444048",
        "N50 (bp)": "195731",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.3",
        "Number of CDSs": "4796",
        "Average Protein Length": "316.8",
        "Coding Ratio (%)": "88.4",
        "Number of rRNAs": "4",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Klebsiella africana",
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                "accession": "GCA_900978845.1",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1697,
                "total_fragments": 1698,
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                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella africana",
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                "total_fragments": 1698,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella quasivariicola",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
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                "accession": "GCA_000788015.1",
                "taxid": 72407,
                "species_taxid": 573,
                "relation_to_type": "type",
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                "ani": 95.2404,
                "matched_fragments": 1533,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Klebsiella pneumoniae",
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                "species_taxid": 573,
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                "matched_fragments": 1525,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
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                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.204,
                "matched_fragments": 1529,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
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                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.1968,
                "matched_fragments": 1531,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella pneumoniae subsp. pneumoniae",
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            {
                "organism_name": "Klebsiella pneumoniae subsp. rhinoscleromatis",
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                "accession": "GCA_000163455.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 95.0617,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella variicola",
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                "ani": 94.324,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella quasipneumoniae subsp. quasipneumoniae",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
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                "relation_to_type": "type",
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                "ani": 81.8803,
                "matched_fragments": 895,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
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                "status": "below_threshold"
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            {
                "organism_name": "Enterobacter cloacae",
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        "gtdb_result": [
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                "accession": "GCF_900978845.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
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        ]
    },
    "_bac2feature": {
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}