{
    "type": "genome",
    "identifier": "GCF_901764995.1",
    "organism": "Actinobacillus porcinus",
    "title": "Actinobacillus porcinus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WTSI",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_901764995.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA1410922",
        "wgs_master": "CABFKI000000000.1",
        "refseq_category": "reference genome",
        "taxid": "51048",
        "species_taxid": "51048",
        "organism_name": "Actinobacillus porcinus",
        "infraspecific_name": "strain=NM319",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/05/30",
        "asm_name": "5970_8#10_v2",
        "asm_submitter": "WTSI",
        "gbrs_paired_asm": "GCA_901764995.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/901/764/995/GCF_901764995.1_5970_8_10_v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2276241",
        "genome_size_ungapped": "2276229",
        "gc_percent": "41.000000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_901764995.1-RS_2024_05_04",
        "annotation_date": "2024-05-04",
        "total_gene_count": "2190",
        "protein_coding_gene_count": "2088",
        "non_coding_gene_count": "62",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-05-30",
    "dateModified": "2019-05-30",
    "datePublished": "2019-05-30",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinobacillus porcinus"
        ],
        "sample_taxid": [
            "51048"
        ],
        "sample_host_organism": [
            "pig"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not available"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Canada"
        ],
        "sample_host_location_id": [],
        "data_size": "0.643 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2276241",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "316727",
        "N50 (bp)": "182117",
        "Gap Ratio (%)": "0.000527",
        "GCcontent (%)": "41.0",
        "Number of CDSs": "2104",
        "Average Protein Length": "319.4",
        "Coding Ratio (%)": "88.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinobacillus porcinus",
                "strain": "strain=NM319",
                "accession": "GCA_901764995.1",
                "taxid": 51048,
                "species_taxid": 51048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 740,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinobacillus porcinus",
                "strain": "strain=NM319",
                "accession": "GCA_900773985.1",
                "taxid": 51048,
                "species_taxid": 51048,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 740,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=ATCC 33392",
                "accession": "GCA_000191405.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6516,
                "matched_fragments": 196,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=NCTC 7857",
                "accession": "GCA_900450845.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.6349,
                "matched_fragments": 198,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haemophilus parainfluenzae",
                "strain": "strain=ATCC 33392",
                "accession": "GCA_000746485.1",
                "taxid": 729,
                "species_taxid": 729,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.5495,
                "matched_fragments": 199,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lonepinella koalarum",
                "strain": "strain=ATCC 700131",
                "accession": "GCA_004565475.1",
                "taxid": 53417,
                "species_taxid": 53417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3238,
                "matched_fragments": 245,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lonepinella koalarum",
                "strain": "strain=DSM 10053",
                "accession": "GCA_004339625.1",
                "taxid": 53417,
                "species_taxid": 53417,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3157,
                "matched_fragments": 245,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Avibacterium gallinarum",
                "strain": "strain=DSM 17481",
                "accession": "GCA_004362535.1",
                "taxid": 755,
                "species_taxid": 755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2368,
                "matched_fragments": 223,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Avibacterium gallinarum",
                "strain": "strain=NCTC11188",
                "accession": "GCA_900454485.1",
                "taxid": 755,
                "species_taxid": 755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2312,
                "matched_fragments": 228,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Avibacterium gallinarum",
                "strain": "strain=NCTC 11188",
                "accession": "GCA_002921135.1",
                "taxid": 755,
                "species_taxid": 755,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1268,
                "matched_fragments": 221,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Basfia succiniciproducens",
                "strain": "strain=JF4016",
                "accession": "GCA_011455875.1",
                "taxid": 653940,
                "species_taxid": 653940,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.0728,
                "matched_fragments": 228,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Avibacterium endocarditidis",
                "strain": "strain=20186H4H1",
                "accession": "GCA_002921145.1",
                "taxid": 380674,
                "species_taxid": 380674,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0606,
                "matched_fragments": 212,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Avibacterium avium",
                "strain": "strain=NCTC 11297",
                "accession": "GCA_900454535.1",
                "taxid": 751,
                "species_taxid": 751,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9728,
                "matched_fragments": 226,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Basfia succiniciproducens",
                "strain": "strain=DSM 22022",
                "accession": "GCA_900101275.1",
                "taxid": 653940,
                "species_taxid": 653940,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 77.9067,
                "matched_fragments": 222,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesocricetibacter intestinalis",
                "strain": "strain=DSM 28403",
                "accession": "GCA_004363295.1",
                "taxid": 1521930,
                "species_taxid": 1521930,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6029,
                "matched_fragments": 104,
                "total_fragments": 743,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_901764995.1",
                "gtdb_species": "s__Basfia_A porcinus",
                "ani": 100.0,
                "matched_fragments": 740,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900444965.1",
                "gtdb_species": "s__Basfia_A rossii",
                "ani": 84.2991,
                "matched_fragments": 497,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003096995.1",
                "gtdb_species": "s__Basfia_A langaaensis",
                "ani": 79.9723,
                "matched_fragments": 390,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_014843355.1",
                "gtdb_species": "s__Basfia_A sp014843355",
                "ani": 79.1086,
                "matched_fragments": 257,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003253005.1",
                "gtdb_species": "s__Haemophilus_D parainfluenzae_M",
                "ani": 78.5519,
                "matched_fragments": 189,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.35",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCA_900756875.1",
                "gtdb_species": "s__Haemophilus_D sp900756875",
                "ani": 78.4535,
                "matched_fragments": 181,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Haemophilus_D",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.91",
                "min_intra_species_ani": "95.91",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_004565475.1",
                "gtdb_species": "s__Lonepinella koalarum",
                "ani": 78.3549,
                "matched_fragments": 243,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Lonepinella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_000017245.1",
                "gtdb_species": "s__Basfia_A succinogenes",
                "ani": 78.1881,
                "matched_fragments": 226,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002921135.1",
                "gtdb_species": "s__Avibacterium gallinarum",
                "ani": 78.1102,
                "matched_fragments": 222,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium",
                "ani_circumscription_radius": 95.623,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_011455875.1",
                "gtdb_species": "s__Basfia succiniciproducens",
                "ani": 78.0889,
                "matched_fragments": 227,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Basfia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000185305.1",
                "gtdb_species": "s__Aggregatibacter segnis",
                "ani": 78.0859,
                "matched_fragments": 195,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.84",
                "min_intra_species_ani": "95.38",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_900636915.1",
                "gtdb_species": "s__Aggregatibacter aphrophilus",
                "ani": 77.9751,
                "matched_fragments": 181,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Aggregatibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.58",
                "min_intra_species_ani": "96.00",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 19,
                "status": "-"
            },
            {
                "accession": "GCF_900454535.1",
                "gtdb_species": "s__Avibacterium avium",
                "ani": 77.9679,
                "matched_fragments": 227,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Avibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.69",
                "min_intra_species_ani": "95.67",
                "mean_intra_species_af": "0.83",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002795405.1",
                "gtdb_species": "s__Caviibacterium pharyngocola",
                "ani": 77.9364,
                "matched_fragments": 228,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Caviibacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004363295.1",
                "gtdb_species": "s__Mesocricetibacter intestinalis",
                "ani": 77.5735,
                "matched_fragments": 105,
                "total_fragments": 743,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Pasteurellaceae;g__Mesocricetibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.02,
        "doubling_h": -0.125,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2373305.944,
        "gc_content": 40.836,
        "coding_genes": 2122.216,
        "rRNA16S_genes": 5.85,
        "tRNA_genes": 60.8,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.857,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.142,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Actinobacillus",
        "porcinus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}