{ "type": "genome", "identifier": "GCF_902141845.1", "organism": "Methylobacterium symbioticum", "title": "Methylobacterium symbioticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902141845.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5704825", "wgs_master": "CABFPH000000000.1", "refseq_category": "reference genome", "taxid": "2584084", "species_taxid": "2584084", "organism_name": "Methylobacterium symbioticum", "infraspecific_name": "strain=SB0023/3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/06/19", "asm_name": "CECT 9862", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_902141845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/141/845/GCF_902141845.1_CECT_9862", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6086597", "genome_size_ungapped": "6086597", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "247", "contig_count": "247", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902141845.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "5866", "protein_coding_gene_count": "5620", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-06-19", "dateModified": "2019-06-19", "datePublished": "2019-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium symbioticum" ], "sample_taxid": [ "2584084" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.652 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6086597", "Number of Sequences": "247", "Longest Sequences (bp)": "178526", "N50 (bp)": "51249", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.1", "Number of CDSs": "5680", "Average Protein Length": "294.7", "Coding Ratio (%)": "82.5", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1893, "total_fragments": 1908, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 92.1573, "matched_fragments": 1446, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 92.0772, "matched_fragments": 1352, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 86.0419, "matched_fragments": 1206, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 85.6297, "matched_fragments": 1171, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 85.4254, "matched_fragments": 1152, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium segetis", "strain": "strain=17J42-1", "accession": "GCA_004348265.1", "taxid": 2488750, "species_taxid": 2488750, "relation_to_type": "type", "validated": true, "ani": 82.9066, "matched_fragments": 1001, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium durans", "strain": "strain=17SD2-17", "accession": "GCA_003173715.1", "taxid": 2202825, "species_taxid": 2202825, "relation_to_type": "type", "validated": true, "ani": 82.7705, "matched_fragments": 1037, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=KCTC 22810", "accession": "GCA_022179555.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 82.52, "matched_fragments": 866, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 82.0839, "matched_fragments": 1045, "total_fragments": 1908, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902141845.1", "gtdb_species": "s__Methylobacterium symbioticum", "ani": 100.0, "matched_fragments": 1893, "total_fragments": 1908, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_902141855.1", "gtdb_species": "s__Methylobacterium dankookense", "ani": 92.1655, "matched_fragments": 1445, "total_fragments": 1908, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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"accession": "GCF_007992195.1", "gtdb_species": "s__Methylobacterium oxalidis", "ani": 83.1098, "matched_fragments": 1005, "total_fragments": 1908, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008040045.1", "gtdb_species": "s__Methylobacterium sp008040045", "ani": 83.0235, "matched_fragments": 1003, "total_fragments": 1908, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.25", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": 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