{
    "type": "genome",
    "identifier": "GCF_902158725.1",
    "organism": "Klebsiella pasteurii",
    "title": "Klebsiella pasteurii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institut Pasteur",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902158725.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5610074",
        "wgs_master": "CABGHC000000000.1",
        "refseq_category": "na",
        "taxid": "2587529",
        "species_taxid": "2587529",
        "organism_name": "Klebsiella pasteurii",
        "infraspecific_name": "na",
        "isolate": "SB6412",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/07/08",
        "asm_name": "SB6412",
        "asm_submitter": "Institut Pasteur",
        "gbrs_paired_asm": "GCA_902158725.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/158/725/GCF_902158725.1_SB6412",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6006767",
        "genome_size_ungapped": "6006692",
        "gc_percent": "55.500000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "5671",
        "protein_coding_gene_count": "5450",
        "non_coding_gene_count": "108",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-07-08",
    "dateModified": "2019-07-08",
    "datePublished": "2019-07-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Klebsiella pasteurii"
        ],
        "sample_taxid": [
            "2587529"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.698 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6006767",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "1842246",
        "N50 (bp)": "1235124",
        "Gap Ratio (%)": "0.001249",
        "GCcontent (%)": "55.3",
        "Number of CDSs": "5533",
        "Average Protein Length": "318.5",
        "Coding Ratio (%)": "88.0",
        "Number of rRNAs": "6",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Klebsiella pasteurii",
                "strain": "",
                "accession": "GCA_902158725.1",
                "taxid": 2587529,
                "species_taxid": 2587529,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1994,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella grimontii",
                "strain": "strain=06D021",
                "accession": "GCA_900200035.1",
                "taxid": 2058152,
                "species_taxid": 2058152,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.0121,
                "matched_fragments": 1705,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Klebsiella michiganensis",
                "strain": "strain=CCUG 66515",
                "accession": "GCA_009173485.1",
                "taxid": 1134687,
                "species_taxid": 1134687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0225,
                "matched_fragments": 1715,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella michiganensis",
                "strain": "strain=DSM 25444",
                "accession": "GCA_002925905.1",
                "taxid": 1134687,
                "species_taxid": 1134687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.949,
                "matched_fragments": 1724,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella oxytoca",
                "strain": "strain=NBRC 105695",
                "accession": "GCA_001598695.1",
                "taxid": 571,
                "species_taxid": 571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.4021,
                "matched_fragments": 1636,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella pneumoniae",
                "strain": "strain=PartO-Kpneumoniae-RM8376",
                "accession": "GCA_022869665.1",
                "taxid": 573,
                "species_taxid": 573,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1587,
                "matched_fragments": 1311,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.978,
                "matched_fragments": 967,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6884,
                "matched_fragments": 930,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter hormaechei",
                "strain": "strain=FDAARGOS 1433",
                "accession": "GCA_019048245.1",
                "taxid": 158836,
                "species_taxid": 158836,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 81.6487,
                "matched_fragments": 896,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter sichuanensis",
                "strain": "strain=WCHECL1597",
                "accession": "GCA_025002605.1",
                "taxid": 2071710,
                "species_taxid": 2071710,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.424,
                "matched_fragments": 905,
                "total_fragments": 1994,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_900200035.1",
                "gtdb_species": "s__Klebsiella grimontii",
                "ani": 96.0158,
                "matched_fragments": 1704,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.56",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 175,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002925905.1",
                "gtdb_species": "s__Klebsiella michiganensis",
                "ani": 93.949,
                "matched_fragments": 1724,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.53",
                "min_intra_species_ani": "97.41",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 291,
                "status": "-"
            },
            {
                "accession": "GCF_001598695.1",
                "gtdb_species": "s__Klebsiella oxytoca",
                "ani": 91.3993,
                "matched_fragments": 1637,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.31",
                "min_intra_species_ani": "98.97",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 181,
                "status": "-"
            },
            {
                "accession": "GCF_009707385.1",
                "gtdb_species": "s__Klebsiella oxytoca_C",
                "ani": 90.0102,
                "matched_fragments": 1518,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902158555.1",
                "gtdb_species": "s__Klebsiella spallanzanii",
                "ani": 88.9099,
                "matched_fragments": 1525,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.75",
                "min_intra_species_ani": "98.01",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_003261575.2",
                "gtdb_species": "s__Klebsiella huaxiensis",
                "ani": 88.041,
                "matched_fragments": 1542,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "95.21",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_005860775.1",
                "gtdb_species": "s__Klebsiella indica",
                "ani": 86.3363,
                "matched_fragments": 1264,
                "total_fragments": 1994,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Klebsiella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.34",
                "min_intra_species_ani": "99.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.073,
        "cell_length": 0.161,
        "doubling_h": 0.072,
        "growth_tmp": 33.764,
        "optimum_tmp": 33.514,
        "optimum_ph": 7.0,
        "genome_size": 5754114.408,
        "gc_content": 56.17,
        "coding_genes": 5508.809,
        "rRNA16S_genes": 7.971,
        "tRNA_genes": 85.856,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.25,
        "range_salinity": 0.0,
        "facultative_respiration": 0.2,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.8,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Klebsiella",
        "pasteurii"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}