{ "type": "genome", "identifier": "GCF_902162175.1", "organism": "Bartonella saheliensis", "title": "Bartonella saheliensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902162175.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5757390", "wgs_master": "CABGUM000000000.1", "refseq_category": "reference genome", "taxid": "1457016", "species_taxid": "1457016", "organism_name": "Bartonella saheliensis", "infraspecific_name": "strain=077", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/11", "asm_name": "PRJEB33358", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_902162175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/162/175/GCF_902162175.1_PRJEB33358", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2258762", "genome_size_ungapped": "2258234", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "132", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902162175.1-RS_2024_05_04", "annotation_date": "2024-05-04", "total_gene_count": "2003", "protein_coding_gene_count": "1817", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-11", "dateModified": "2019-07-11", "datePublished": "2019-07-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella saheliensis" ], "sample_taxid": [ "1457016" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 12.5, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2258762", "Number of Sequences": "131", "Longest Sequences (bp)": "239272", "N50 (bp)": "62476", "Gap Ratio (%)": "0.023376", "GCcontent (%)": "38.4", "Number of CDSs": "1820", "Average Protein Length": "289.1", "Coding Ratio (%)": "69.9", "Number of rRNAs": "2", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 678, "total_fragments": 683, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 92.7785, "matched_fragments": 540, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella mastomydis", "strain": "strain=008", "accession": "GCA_900185775.1", "taxid": 1820002, "species_taxid": 1820002, "relation_to_type": "type", "validated": true, "ani": 92.192, "matched_fragments": 523, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_000518165.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 92.1013, "matched_fragments": 489, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_902825135.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 91.9996, "matched_fragments": 494, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=F9251", "accession": "GCA_000278315.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 91.9827, "matched_fragments": 504, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 90.6254, "matched_fragments": 525, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella gabonensis", "strain": "strain=669", "accession": "GCA_903679515.1", "taxid": 2699889, "species_taxid": 2699889, "relation_to_type": "type", "validated": true, "ani": 89.9411, "matched_fragments": 464, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella tribocorum", "strain": "strain=type strain:506 = CIP 105476", "accession": "GCA_000196435.1", "taxid": 85701, "species_taxid": 85701, "relation_to_type": "suspected-type", "validated": true, "ani": 89.1872, "matched_fragments": 524, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella florencae", "strain": "strain=R4", "accession": "GCA_000312525.1", "taxid": 928210, "species_taxid": 928210, "relation_to_type": "type", "validated": true, "ani": 83.7902, "matched_fragments": 461, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella birtlesii", "strain": "strain=IBS 325", "accession": "GCA_000273375.1", "taxid": 111504, "species_taxid": 111504, "relation_to_type": "type", "validated": true, "ani": 83.1676, "matched_fragments": 424, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella phoceensis", "strain": "strain=CIP107707", "accession": "GCA_902825145.1", "taxid": 270249, "species_taxid": 270249, "relation_to_type": "type", "validated": true, "ani": 82.911, "matched_fragments": 414, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=ATCC 700727", "accession": "GCA_902825115.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.6883, "matched_fragments": 396, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=OK-94-513", "accession": "GCA_000278235.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.5632, "matched_fragments": 407, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=CIP 105477", "accession": "GCA_013388295.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 82.4813, "matched_fragments": 389, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella alsatica", "strain": "strain=IBS 382", "accession": "GCA_000280015.1", "taxid": 52764, "species_taxid": 52764, "relation_to_type": "type", "validated": true, "ani": 82.4325, "matched_fragments": 389, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella callosciuri", "strain": "strain=DSM 28538", "accession": "GCA_014203215.1", "taxid": 686223, "species_taxid": 686223, "relation_to_type": "type", "validated": true, "ani": 82.4063, "matched_fragments": 388, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.3798, "matched_fragments": 438, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.3759, "matched_fragments": 429, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=ATCC 700133", "accession": "GCA_000526895.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.7038, "matched_fragments": 402, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC 12862", "accession": "GCA_000278155.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.7003, "matched_fragments": 412, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella doshiae", "strain": "strain=NCTC12862", "accession": "GCA_900445535.1", "taxid": 33044, "species_taxid": 33044, "relation_to_type": "type", "validated": true, "ani": 81.6663, "matched_fragments": 412, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella rattaustraliani", "strain": "strain=AUST/NH4", "accession": "GCA_000312565.2", "taxid": 481139, "species_taxid": 481139, "relation_to_type": "type", "validated": true, "ani": 81.2286, "matched_fragments": 418, "total_fragments": 683, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 12.5, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003606345.3", "gtdb_species": "s__Bartonella krasnovii", "ani": 92.7777, "matched_fragments": 540, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000518165.1", "gtdb_species": "s__Bartonella elizabethae", "ani": 92.1013, "matched_fragments": 489, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.20", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "-" }, { "accession": 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tribocorum", "ani": 89.1914, "matched_fragments": 522, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002777915.1", "gtdb_species": "s__Bartonella tribocorum_A", "ani": 89.1191, "matched_fragments": 496, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018155095.1", "gtdb_species": "s__Bartonella queenslandensis_B", "ani": 88.7714, 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"total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902150025.1", "gtdb_species": "s__Bartonella massiliensis", "ani": 87.8375, "matched_fragments": 508, "total_fragments": 683, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000312525.1", "gtdb_species": "s__Bartonella florencae", "ani": 83.8134, "matched_fragments": 460, "total_fragments": 683, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.94", "min_intra_species_ani": "98.02", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.315, "cell_length": 0.071, "doubling_h": 0.627, "growth_tmp": 36.224, "optimum_tmp": 33.909, "optimum_ph": 7.366, "genome_size": 1912158.156, "gc_content": 38.327, "coding_genes": 1584.487, "rRNA16S_genes": 2.0, "tRNA_genes": 42.703, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.583, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.687, "coccus_cell_shape": 0.062, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.25, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "saheliensis" ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }