{ "type": "genome", "identifier": "GCF_902167635.1", "organism": "Chitinophaga vietnamensis", "title": "Chitinophaga vietnamensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "URMITE", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902167635.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5768243", "wgs_master": "CABHMS000000000.1", "refseq_category": "na", "taxid": "2593957", "species_taxid": "2593957", "organism_name": "Chitinophaga vietnamensis", "infraspecific_name": "strain=BD 01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/16", "asm_name": "PRJEB33168", "asm_submitter": "URMITE", "gbrs_paired_asm": "GCA_902167635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/167/635/GCF_902167635.1_PRJEB33168", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6308408", "genome_size_ungapped": "6308408", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902167635.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5215", "protein_coding_gene_count": "5139", "non_coding_gene_count": "69", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-16", "dateModified": "2019-07-16", "datePublished": "2019-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Chitinophaga vietnamensis" ], "sample_taxid": [ "2593957" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.785 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6308408", "Number of Sequences": "15", "Longest Sequences (bp)": "1097710", "N50 (bp)": "719153", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.6", "Number of CDSs": "5138", "Average Protein Length": "368.2", "Coding Ratio (%)": "90.0", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chitinophaga vietnamensis", "strain": "strain=BD 01", "accession": "GCA_902167635.1", "taxid": 2593957, "species_taxid": 2593957, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2079, "total_fragments": 2096, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Chitinophaga oryzae", "strain": "strain=1303", "accession": "GCA_012516375.2", "taxid": 2725414, "species_taxid": 2725414, "relation_to_type": "type", "validated": true, "ani": 79.6036, "matched_fragments": 868, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga eiseniae", "strain": "strain=DSM 22224", "accession": "GCA_900167135.1", "taxid": 634771, "species_taxid": 634771, "relation_to_type": "type", "validated": true, "ani": 79.5414, "matched_fragments": 820, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga solisilvae", "strain": "strain=O9", "accession": "GCA_009928525.1", "taxid": 1233460, "species_taxid": 1233460, "relation_to_type": "type", "validated": true, "ani": 79.5236, "matched_fragments": 832, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga varians", "strain": "strain=KACC 19415", "accession": "GCA_014529945.1", "taxid": 2202339, "species_taxid": 2202339, "relation_to_type": "type", "validated": true, "ani": 79.5232, "matched_fragments": 822, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga flava", "strain": "strain=GDMCC 1.1325", "accession": "GCA_003308995.1", "taxid": 2259036, "species_taxid": 2259036, "relation_to_type": "type", "validated": true, "ani": 79.4097, "matched_fragments": 779, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga qingshengii", "strain": "strain=JCM 30026", "accession": "GCA_014529935.1", "taxid": 1569794, "species_taxid": 1569794, "relation_to_type": "type", "validated": true, "ani": 79.4071, "matched_fragments": 821, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga fulva", "strain": "strain=G-6-1-13", "accession": "GCA_012927205.1", "taxid": 2728842, "species_taxid": 2728842, "relation_to_type": "type", "validated": true, "ani": 79.4069, "matched_fragments": 823, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 79.3108, "matched_fragments": 741, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga dinghuensis", "strain": "strain=DSM 29821", "accession": "GCA_003259435.1", "taxid": 1539050, "species_taxid": 1539050, "relation_to_type": "type", "validated": true, "ani": 79.2995, "matched_fragments": 649, "total_fragments": 2096, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga niastensis", "strain": "strain=DSM 24859", "accession": "GCA_003014755.1", "taxid": 536980, "species_taxid": 536980, "relation_to_type": "type", "validated": 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