{ "type": "genome", "identifier": "GCF_902170565.1", "organism": "Yersinia thracica", "title": "Yersinia thracica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902170565.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5778908", "wgs_master": "CABHXX000000000.1", "refseq_category": "reference genome", "taxid": "2890319", "species_taxid": "2890319", "organism_name": "Yersinia thracica", "infraspecific_name": "strain=IP34646", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/30", "asm_name": "IP34646", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_902170565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/170/565/GCF_902170565.1_IP34646", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4311418", "genome_size_ungapped": "4311418", "gc_percent": "47.500000", "replicon_count": "0", "scaffold_count": "140", "contig_count": "140", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "3931", "protein_coding_gene_count": "3747", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-30", "dateModified": "2019-07-30", "datePublished": "2019-07-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia kristensenii" ], "sample_taxid": [ "28152" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.233 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4311418", "Number of Sequences": "140", "Longest Sequences (bp)": "322253", "N50 (bp)": "83965", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.4", "Number of CDSs": "3760", "Average Protein Length": "320.8", "Coding Ratio (%)": "83.9", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia thracica", "strain": "strain=IP34646", "accession": "GCA_902170565.1", "taxid": 2890319, "species_taxid": 2890319, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1374, "total_fragments": 1377, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia rochesterensis", "strain": "strain=ATCC BAA-2637", "accession": "GCA_003600645.1", "taxid": 1604335, "species_taxid": 1604335, "relation_to_type": "type", "validated": true, "ani": 94.9926, "matched_fragments": 1212, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia kristensenii", "strain": "strain=NCTC11471", "accession": "GCA_900460525.1", "taxid": 28152, "species_taxid": 28152, "relation_to_type": "type", "validated": true, "ani": 93.2109, "matched_fragments": 1222, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia kristensenii", "strain": "strain=ATCC 33638", "accession": "GCA_000173715.1", "taxid": 28152, "species_taxid": 28152, "relation_to_type": "type", "validated": true, "ani": 93.176, "matched_fragments": 1189, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica", "strain": "strain=ATCC 9610", "accession": "GCA_000755055.1", "taxid": 630, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.3407, "matched_fragments": 1135, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NBRC 105693", "accession": "GCA_001598735.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.3304, "matched_fragments": 1134, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NCTC12982", "accession": "GCA_901472495.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.3232, "matched_fragments": 1149, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia artesiana", "strain": "strain=IP42281", "accession": "GCA_902726545.1", "taxid": 2890315, "species_taxid": 2890315, "relation_to_type": "type", "validated": true, "ani": 88.2438, "matched_fragments": 1113, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. palearctica", "strain": "strain=Y11", "accession": "GCA_000253175.1", "taxid": 150053, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 88.1445, "matched_fragments": 1171, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia canariae", "strain": "strain=NCTC 14382", "accession": "GCA_009831415.1", "taxid": 2607663, "species_taxid": 2607663, "relation_to_type": "type", "validated": true, "ani": 87.8614, "matched_fragments": 1151, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia hibernica", "strain": "strain=CFS1934", "accession": "GCA_004124235.1", "taxid": 2339259, "species_taxid": 2339259, "relation_to_type": "type", "validated": true, "ani": 86.9111, "matched_fragments": 1139, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia aldovae", "strain": "strain=IP06005", "accession": "GCA_001091225.1", "taxid": 29483, "species_taxid": 29483, "relation_to_type": "type", "validated": true, "ani": 84.689, "matched_fragments": 963, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia nevei", "strain": "strain=S15", "accession": "GCA_008364245.1", "taxid": 2703794, "species_taxid": 2703794, "relation_to_type": "type", "validated": true, "ani": 79.044, "matched_fragments": 407, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 79.0049, "matched_fragments": 389, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rahnella ecdela", "strain": "strain=FRB 231", "accession": "GCA_019049625.1", "taxid": 2816250, "species_taxid": 2816250, "relation_to_type": "type", "validated": true, "ani": 78.8438, "matched_fragments": 355, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pectobacterium colocasium", "strain": "strain=LJ1", "accession": "GCA_020181655.1", "taxid": 2878098, "species_taxid": 2878098, "relation_to_type": "type", "validated": true, "ani": 78.2443, "matched_fragments": 301, "total_fragments": 1377, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001123825.1", "gtdb_species": "s__Yersinia kristensenii_C", "ani": 99.5821, "matched_fragments": 1315, 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