{ "type": "genome", "identifier": "GCF_902170785.1", "organism": "Yersinia proxima", "title": "Yersinia proxima", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902170785.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5778935", "wgs_master": "CABHYG000000000.1", "refseq_category": "reference genome", "taxid": "2890316", "species_taxid": "2890316", "organism_name": "Yersinia proxima", "infraspecific_name": "strain=IP37424", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/07/31", "asm_name": "IP37424", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_902170785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/170/785/GCF_902170785.1_IP37424", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4716658", "genome_size_ungapped": "4716658", "gc_percent": "47.000000", "replicon_count": "0", "scaffold_count": "24", "contig_count": "24", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902170785.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "4299", "protein_coding_gene_count": "4165", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-07-31", "dateModified": "2019-07-31", "datePublished": "2019-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Yersinia enterocolitica" ], "sample_taxid": [ "630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.345 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4716658", "Number of Sequences": "24", "Longest Sequences (bp)": "937248", "N50 (bp)": "490559", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.0", "Number of CDSs": "4175", "Average Protein Length": "324.8", "Coding Ratio (%)": "86.3", "Number of rRNAs": "6", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Yersinia proxima", "strain": "strain=IP37424", "accession": "GCA_902170785.1", "taxid": 2890316, "species_taxid": 2890316, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1564, "total_fragments": 1565, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Yersinia artesiana", "strain": "strain=IP42281", "accession": "GCA_902726545.1", "taxid": 2890315, "species_taxid": 2890315, "relation_to_type": "type", "validated": true, "ani": 94.7568, "matched_fragments": 1268, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NBRC 105693", "accession": "GCA_001598735.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 93.9051, "matched_fragments": 1273, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica subsp. enterocolitica", "strain": "strain=NCTC12982", "accession": "GCA_901472495.1", "taxid": 150052, "species_taxid": 630, "relation_to_type": "type", "validated": true, "ani": 93.8909, "matched_fragments": 1292, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yersinia enterocolitica", "strain": 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