{
    "type": "genome",
    "identifier": "GCF_902459595.1",
    "organism": "Pandoraea soli",
    "title": "Pandoraea soli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "LM-UGent",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902459595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5537686",
        "wgs_master": "CABPSG000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2508293",
        "species_taxid": "2508293",
        "organism_name": "Pandoraea soli",
        "infraspecific_name": "strain=LMG 31014",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/11",
        "asm_name": "LMG 31014",
        "asm_submitter": "LM-UGent",
        "gbrs_paired_asm": "GCA_902459595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/595/GCF_902459595.1_LMG_31014",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4961982",
        "genome_size_ungapped": "4961982",
        "gc_percent": "63.500000",
        "replicon_count": "0",
        "scaffold_count": "51",
        "contig_count": "51",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902459595.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4471",
        "protein_coding_gene_count": "4335",
        "non_coding_gene_count": "67",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-11",
    "dateModified": "2019-09-11",
    "datePublished": "2019-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pandoraea soli"
        ],
        "sample_taxid": [
            "2508293"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "1.381 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4961982",
        "Number of Sequences": "51",
        "Longest Sequences (bp)": "921398",
        "N50 (bp)": "370563",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.6",
        "Number of CDSs": "4392",
        "Average Protein Length": "326.3",
        "Coding Ratio (%)": "86.7",
        "Number of rRNAs": "2",
        "Number of tRNAs": "62",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Pandoraea soli",
                "strain": "strain=LMG 31014",
                "accession": "GCA_902459595.1",
                "taxid": 2508293,
                "species_taxid": 2508293,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1627,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pandoraea cepalis",
                "strain": "strain=LMG 31106",
                "accession": "GCA_902459665.1",
                "taxid": 2508294,
                "species_taxid": 2508294,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.8105,
                "matched_fragments": 1461,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Pandoraea eparura",
                "strain": "strain=LMG 31012",
                "accession": "GCA_902459725.1",
                "taxid": 2508291,
                "species_taxid": 2508291,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.0348,
                "matched_fragments": 1404,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea terrigena",
                "strain": "strain=LMG 31013",
                "accession": "GCA_902459705.1",
                "taxid": 2508292,
                "species_taxid": 2508292,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.542,
                "matched_fragments": 1375,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea bronchicola",
                "strain": "strain=LMG 20603",
                "accession": "GCA_902459805.1",
                "taxid": 2508287,
                "species_taxid": 2508287,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.7421,
                "matched_fragments": 1217,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea communis",
                "strain": "strain=LMG 31110",
                "accession": "GCA_902459745.1",
                "taxid": 2508297,
                "species_taxid": 2508297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3303,
                "matched_fragments": 1270,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea capi",
                "strain": "strain=LMG 20602",
                "accession": "GCA_902459735.1",
                "taxid": 2508286,
                "species_taxid": 2508286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9594,
                "matched_fragments": 1197,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea morbifera",
                "strain": "strain=LMG 31116",
                "accession": "GCA_902459575.1",
                "taxid": 2508300,
                "species_taxid": 2508300,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.845,
                "matched_fragments": 1187,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "",
                "accession": "GCA_902499185.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4896,
                "matched_fragments": 563,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia anthina",
                "strain": "strain=DSM 16086",
                "accession": "GCA_016836725.1",
                "taxid": 179879,
                "species_taxid": 179879,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.4874,
                "matched_fragments": 561,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
                "strain": "strain=LMG 20358",
                "accession": "GCA_902833085.1",
                "taxid": 101571,
                "species_taxid": 101571,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4536,
                "matched_fragments": 563,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia gardini",
                "strain": "strain=LMG 32171",
                "accession": "GCA_907164575.1",
                "taxid": 2823469,
                "species_taxid": 2823469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3752,
                "matched_fragments": 452,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia perseverans",
                "strain": "strain=INN12",
                "accession": "GCA_022870505.1",
                "taxid": 2615214,
                "species_taxid": 2615214,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2141,
                "matched_fragments": 590,
                "total_fragments": 1627,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_902459665.1",
                "gtdb_species": "s__Pandoraea cepalis",
                "ani": 95.8105,
                "matched_fragments": 1461,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
                "min_intra_species_ani": "95.81",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCF_902459725.1",
                "gtdb_species": "s__Pandoraea eparura",
                "ani": 91.0175,
                "matched_fragments": 1406,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902459705.1",
                "gtdb_species": "s__Pandoraea terrigena",
                "ani": 90.5477,
                "matched_fragments": 1374,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902459805.1",
                "gtdb_species": "s__Pandoraea bronchicola",
                "ani": 86.7375,
                "matched_fragments": 1218,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902459745.1",
                "gtdb_species": "s__Pandoraea communis",
                "ani": 86.347,
                "matched_fragments": 1268,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0166,
                "mean_intra_species_ani": "98.36",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_902459555.1",
                "gtdb_species": "s__Pandoraea horticolens",
                "ani": 86.2012,
                "matched_fragments": 1249,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0166,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000807775.2",
                "gtdb_species": "s__Pandoraea fibrosis",
                "ani": 86.1213,
                "matched_fragments": 1246,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.41",
                "min_intra_species_ani": "98.83",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000767615.3",
                "gtdb_species": "s__Pandoraea pnomenusa",
                "ani": 84.9813,
                "matched_fragments": 1194,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "95.12",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_902459735.1",
                "gtdb_species": "s__Pandoraea capi",
                "ani": 84.9594,
                "matched_fragments": 1197,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.45",
                "min_intra_species_ani": "96.45",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000814845.2",
                "gtdb_species": "s__Pandoraea sputorum",
                "ani": 84.7954,
                "matched_fragments": 1189,
                "total_fragments": 1627,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.03",
                "min_intra_species_ani": "97.40",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 5,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.26,
        "cell_length": 0.29,
        "doubling_h": null,
        "growth_tmp": 32.111,
        "optimum_tmp": 30.0,
        "optimum_ph": 7.0,
        "genome_size": 5697733.921,
        "gc_content": 63.431,
        "coding_genes": 4814.511,
        "rRNA16S_genes": 3.722,
        "tRNA_genes": 64.855,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Pandoraea",
        "soli"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}