{ "type": "genome", "identifier": "GCF_902459655.1", "organism": "Pandoraea anhela", "title": "Pandoraea anhela", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902459655.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5537669", "wgs_master": "CABPSB000000000.1", "refseq_category": "reference genome", "taxid": "2508295", "species_taxid": "2508295", "organism_name": "Pandoraea anhela", "infraspecific_name": "strain=LMG 31108", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/09/12", "asm_name": "LMG 31108", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_902459655.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/655/GCF_902459655.1_LMG_31108", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6046012", "genome_size_ungapped": "6046012", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902459655.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "5271", "protein_coding_gene_count": "5121", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-09-12", "dateModified": "2019-09-12", "datePublished": "2019-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Pandoraea anhela" ], "sample_taxid": [ "2508295" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.682 MB", 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"strain": "strain=LMG 20602", "accession": "GCA_902459735.1", "taxid": 2508286, "species_taxid": 2508286, "relation_to_type": "type", "validated": true, "ani": 88.673, "matched_fragments": 1529, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea aquatica", "strain": "strain=LMG 31011", "accession": "GCA_902459565.1", "taxid": 2508290, "species_taxid": 2508290, "relation_to_type": "type", "validated": true, "ani": 86.4567, "matched_fragments": 1489, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea faecigallinarum", "strain": "strain=DSM 23572", "accession": "GCA_001029105.3", "taxid": 656179, "species_taxid": 656179, "relation_to_type": "type", "validated": true, "ani": 86.3922, "matched_fragments": 1381, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea anapnoica", "strain": "strain=LMG 31117", "accession": "GCA_902459765.1", "taxid": 2508301, "species_taxid": 2508301, "relation_to_type": "type", "validated": true, "ani": 86.3595, "matched_fragments": 1463, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea commovens", "strain": "strain=LMG 31010", "accession": "GCA_902459615.1", "taxid": 2508289, "species_taxid": 2508289, "relation_to_type": "type", "validated": true, "ani": 86.349, "matched_fragments": 1439, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea oxalativorans", "strain": "strain=DSM 23570", "accession": "GCA_000972785.3", "taxid": 573737, "species_taxid": 573737, "relation_to_type": "type", "validated": true, "ani": 86.3394, "matched_fragments": 1413, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea captiosa", "strain": "strain=LMG 31118", "accession": "GCA_902459775.1", "taxid": 2508302, "species_taxid": 2508302, "relation_to_type": "type", "validated": true, "ani": 86.1267, "matched_fragments": 1463, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea vervacti", "strain": "strain=NS15", "accession": "GCA_000934605.2", "taxid": 656178, "species_taxid": 656178, "relation_to_type": "type", "validated": true, "ani": 86.0891, "matched_fragments": 1440, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea communis", "strain": "strain=LMG 31110", "accession": "GCA_902459745.1", "taxid": 2508297, "species_taxid": 2508297, "relation_to_type": "type", "validated": true, "ani": 84.9126, "matched_fragments": 1307, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia saeva", "strain": "strain=LMG 31841", "accession": "GCA_907164555.1", "taxid": 2777537, "species_taxid": 2777537, "relation_to_type": "type", "validated": true, "ani": 78.2788, "matched_fragments": 442, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 78.2141, "matched_fragments": 554, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 78.2141, "matched_fragments": 552, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 78.087, "matched_fragments": 483, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 78.0271, "matched_fragments": 508, "total_fragments": 1983, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902459655.1", "gtdb_species": "s__Pandoraea anhela", "ani": 100.0, "matched_fragments": 1981, "total_fragments": 1983, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_902459735.1", 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