{
    "type": "genome",
    "identifier": "GCF_902459805.1",
    "organism": "Pandoraea bronchicola",
    "title": "Pandoraea bronchicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "LM-UGent",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902459805.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5537671",
        "wgs_master": "CABPST000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2508287",
        "species_taxid": "2508287",
        "organism_name": "Pandoraea bronchicola",
        "infraspecific_name": "strain=LMG 20603",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/09/11",
        "asm_name": "LMG 20603",
        "asm_submitter": "LM-UGent",
        "gbrs_paired_asm": "GCA_902459805.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/459/805/GCF_902459805.1_LMG_20603",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5351123",
        "genome_size_ungapped": "5351123",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "34",
        "contig_count": "34",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902459805.1-RS_2024_05_05",
        "annotation_date": "2024-05-05",
        "total_gene_count": "4805",
        "protein_coding_gene_count": "4674",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-09-11",
    "dateModified": "2019-09-11",
    "datePublished": "2019-09-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pandoraea bronchicola"
        ],
        "sample_taxid": [
            "2508287"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA"
        ],
        "sample_host_location_id": [],
        "data_size": "1.493 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5351123",
        "Number of Sequences": "34",
        "Longest Sequences (bp)": "977860",
        "N50 (bp)": "323330",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.0",
        "Number of CDSs": "4764",
        "Average Protein Length": "325.4",
        "Coding Ratio (%)": "86.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
                "organism_name": "Pandoraea communis",
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                "accession": "GCA_902459745.1",
                "taxid": 2508297,
                "species_taxid": 2508297,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
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                "species_taxid": 2508298,
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            },
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                "status": "below_threshold"
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                "organism_name": "Pandoraea apista",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Pandoraea apista",
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            {
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                "accession": "GCA_902459595.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Burkholderia ubonensis",
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                "accession": "GCA_902499185.1",
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            },
            {
                "organism_name": "Burkholderia ubonensis",
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                "accession": "GCA_902833085.1",
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                "species_taxid": 101571,
                "relation_to_type": "type",
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                "ani": 78.4428,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia saeva",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia domus",
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                "accession": "GCA_905220705.1",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia haematera",
                "strain": "strain=LMG 31837",
                "accession": "GCA_905220975.1",
                "taxid": 2793077,
                "species_taxid": 2793077,
                "relation_to_type": "type",
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                "ani": 77.909,
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                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Pandoraea",
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                "mean_intra_species_ani": "N/A",
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    },
    "_bac2feature": {
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}