{ "type": "genome", "identifier": "GCF_902497555.1", "organism": "Amycolatopsis camponoti", "title": "Amycolatopsis camponoti", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Sanford Burnham Prebys Medical Discovery Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902497555.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5930814", "wgs_master": "CABVGP000000000.1", "refseq_category": "reference genome", "taxid": "2606593", "species_taxid": "2606593", "organism_name": "Amycolatopsis camponoti", "infraspecific_name": "strain=A23", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2019/11/07", "asm_name": "ASM90249755v1", "asm_submitter": "Sanford Burnham Prebys Medical Discovery Institute", "gbrs_paired_asm": "GCA_902497555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/497/555/GCF_902497555.1_ASM90249755v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10560374", "genome_size_ungapped": "10560374", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902497555.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "9946", "protein_coding_gene_count": "9796", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2019-11-07", "dateModified": "2019-11-07", "datePublished": "2019-11-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Amycolatopsis camponoti" ], "sample_taxid": [ "2606593" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia" ], "sample_host_location_id": [], "data_size": "2.808 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10560374", "Number of Sequences": "6", "Longest Sequences (bp)": "4455037", "N50 (bp)": "3441384", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.2", "Number of CDSs": "9993", "Average Protein Length": "324.0", "Coding Ratio (%)": "92.0", "Number of rRNAs": "12", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amycolatopsis camponoti", "strain": "strain=A23", "accession": "GCA_902497555.1", "taxid": 2606593, "species_taxid": 2606593, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3516, "total_fragments": 3517, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=DSM 44654", "accession": "GCA_900107925.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 91.0072, "matched_fragments": 2732, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis pretoriensis", "strain": "strain=NRRL B-24133", "accession": "GCA_002156025.1", "taxid": 218821, "species_taxid": 218821, "relation_to_type": "type", "validated": true, "ani": 90.9736, "matched_fragments": 2453, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=NRRL B-24131", "accession": "GCA_002156005.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 89.2968, "matched_fragments": 2336, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis lexingtonensis", "strain": "strain=DSM 44653", "accession": "GCA_014873755.1", "taxid": 218822, "species_taxid": 218822, "relation_to_type": "type", "validated": true, "ani": 89.2829, "matched_fragments": 2676, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis eburnea", "strain": "strain=GLM-1", "accession": "GCA_003937945.1", "taxid": 2267691, "species_taxid": 2267691, "relation_to_type": "type", "validated": true, "ani": 89.2683, "matched_fragments": 2573, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis australiensis", "strain": "strain=DSM 44671", "accession": "GCA_900119165.1", "taxid": 546364, "species_taxid": 546364, "relation_to_type": "type", "validated": true, "ani": 89.2671, "matched_fragments": 2388, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis mediterranei", "strain": "strain=S699", "accession": "GCA_000220945.1", "taxid": 33910, "species_taxid": 33910, "relation_to_type": "type", "validated": true, "ani": 88.7544, "matched_fragments": 2443, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vastitatis", "strain": "strain=H5", "accession": "GCA_002234595.1", "taxid": 1905142, "species_taxid": 1905142, "relation_to_type": "type", "validated": true, "ani": 88.7374, "matched_fragments": 2396, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis vancoresmycina", "strain": "strain=DSM 44592", "accession": "GCA_000388135.1", "taxid": 208444, "species_taxid": 208444, "relation_to_type": "type", "validated": true, "ani": 88.6527, "matched_fragments": 2108, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis balhimycina", "strain": "strain=DSM 44591", "accession": "GCA_000384295.1", "taxid": 208443, "species_taxid": 208443, "relation_to_type": "type", "validated": true, "ani": 88.6098, "matched_fragments": 2465, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis kentuckyensis", "strain": "strain=NRRL B-24129", "accession": "GCA_002155975.1", "taxid": 218823, "species_taxid": 218823, "relation_to_type": "type", "validated": true, "ani": 88.6082, "matched_fragments": 2160, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis jejuensis", "strain": "strain=NRRL B-24427", "accession": "GCA_000717335.1", "taxid": 330084, "species_taxid": 330084, "relation_to_type": "type", "validated": true, "ani": 80.8622, "matched_fragments": 1474, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis thermalba", "strain": "strain=NRRL B-24845", "accession": "GCA_003385215.1", "taxid": 944492, "species_taxid": 944492, "relation_to_type": "type", "validated": true, "ani": 80.0991, "matched_fragments": 1302, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella cavernicola", "strain": "strain=ASG 168", "accession": "GCA_016595675.1", "taxid": 2800127, "species_taxid": 2800127, "relation_to_type": "type", "validated": true, "ani": 79.2083, "matched_fragments": 1154, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis aidingensis", "strain": "strain=YIM 96748", "accession": "GCA_018885265.1", "taxid": 2842453, "species_taxid": 2842453, "relation_to_type": "type", "validated": true, "ani": 78.7108, "matched_fragments": 1086, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prauserella isguenensis", "strain": "strain=CECT 8577", "accession": "GCA_014191605.1", "taxid": 1470180, "species_taxid": 1470180, "relation_to_type": "type", "validated": true, "ani": 78.6358, "matched_fragments": 834, "total_fragments": 3517, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.78, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902497555.1", "gtdb_species": "s__Amycolatopsis sp902497555", "ani": 100.0, "matched_fragments": 3516, "total_fragments": 3517, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Amycolatopsis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900107925.1", "gtdb_species": "s__Amycolatopsis pretoriensis", "ani": 91.028, 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