{ "type": "genome", "identifier": "GCF_902499075.1", "organism": "Burkholderia pseudomultivorans", "title": "Burkholderia pseudomultivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LM-UGent", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902499075.1", "bioproject": "PRJNA224116", "biosample": "SAMEA5795710", "wgs_master": "CABVPP000000000.1", "refseq_category": "reference genome", "taxid": "1207504", "species_taxid": "1207504", "organism_name": "Burkholderia pseudomultivorans", "infraspecific_name": "na", "isolate": "LMG 26883", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/25", "asm_name": "ASM90249907v1", "asm_submitter": "LM-UGent", "gbrs_paired_asm": "GCA_902499075.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/499/075/GCF_902499075.1_ASM90249907v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7396511", "genome_size_ungapped": "7396511", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "150", "contig_count": "150", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902499075.1-RS_2024_07_23", "annotation_date": "2024-07-23", "total_gene_count": "6950", "protein_coding_gene_count": "6738", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-25", "dateModified": "2020-04-25", "datePublished": "2020-04-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia pseudomultivorans" ], "sample_taxid": [ "1207504" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.001 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7396511", "Number of Sequences": "150", "Longest Sequences (bp)": "518527", "N50 (bp)": "93947", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.0", "Number of CDSs": "6730", "Average Protein Length": "313.4", "Coding Ratio (%)": "85.5", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2380, "total_fragments": 2390, "ani_threshold": 95, 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"Burkholderia pyrrocinia", "strain": "strain=DSM 10685", "accession": "GCA_001028665.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 90.781, "matched_fragments": 1730, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pyrrocinia", "strain": "strain=LMG 14191", "accession": "GCA_902832895.1", "taxid": 60550, "species_taxid": 60550, "relation_to_type": "suspected-type", "validated": true, "ani": 90.7803, "matched_fragments": 1717, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cenocepacia", "strain": "strain=NCTC13227", "accession": "GCA_900446215.1", "taxid": 95486, "species_taxid": 95486, "relation_to_type": "type", "validated": true, "ani": 90.6685, "matched_fragments": 1819, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia arboris", "strain": "", "accession": "GCA_902499125.1", "taxid": 488730, "species_taxid": 488730, "relation_to_type": "type", "validated": true, "ani": 90.3746, "matched_fragments": 1777, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia lata", "strain": "strain=383", "accession": "GCA_000012945.1", "taxid": 482957, "species_taxid": 482957, "relation_to_type": "suspected-type", "validated": true, "ani": 90.3482, "matched_fragments": 1800, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=LMG 20980", "accession": "GCA_902830395.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 90.3381, "matched_fragments": 1791, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 90.32, "matched_fragments": 1781, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=NBRC 14074", "accession": "GCA_001528845.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 90.281, "matched_fragments": 1789, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "", "accession": "GCA_902498995.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 90.2548, "matched_fragments": 1780, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ambifaria", "strain": "strain=AMMD", "accession": "GCA_000959545.1", "taxid": 152480, "species_taxid": 152480, "relation_to_type": "type", 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"total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia dolosa", "strain": "strain=LMG 18943", "accession": "GCA_902499135.1", "taxid": 152500, "species_taxid": 152500, "relation_to_type": "type", "validated": true, "ani": 89.8532, "matched_fragments": 1479, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia territorii", "strain": "strain=CCUG 65687", "accession": "GCA_008802115.1", "taxid": 1503055, "species_taxid": 1503055, "relation_to_type": "type", "validated": true, "ani": 89.7499, "matched_fragments": 1168, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "strain=LMG 20358", "accession": "GCA_902833085.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 89.1189, "matched_fragments": 1603, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 89.0773, "matched_fragments": 1556, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 83.9198, "matched_fragments": 1327, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 82.057, "matched_fragments": 1093, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902499075.1", "gtdb_species": "s__Burkholderia pseudomultivorans", "ani": 100.0, "matched_fragments": 2380, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.22", "min_intra_species_ani": "95.54", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCF_000959525.1", "gtdb_species": "s__Burkholderia multivorans", "ani": 90.9734, "matched_fragments": 1722, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.58", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.90", 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"min_intra_species_af": "0.81", "num_clustered_genomes": 292, "status": "-" }, { "accession": "GCF_000949135.2", "gtdb_species": "s__Burkholderia sp000949135", "ani": 90.5795, "matched_fragments": 1743, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.85", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_003853705.1", "gtdb_species": "s__Burkholderia sp003853705", "ani": 90.5201, "matched_fragments": 1767, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902833145.1", "gtdb_species": "s__Burkholderia sp902833145", "ani": 90.5128, "matched_fragments": 1694, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003853415.1", "gtdb_species": "s__Burkholderia sp003853415", "ani": 90.4817, "matched_fragments": 1717, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.32", "min_intra_species_ani": "99.32", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902499125.1", "gtdb_species": "s__Burkholderia arboris", "ani": 90.3867, "matched_fragments": 1775, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014211915.1", "gtdb_species": "s__Burkholderia cenocepacia_B", "ani": 90.3793, "matched_fragments": 1733, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.1666, "mean_intra_species_ani": "97.84", "min_intra_species_ani": "96.64", "mean_intra_species_af": "0.90", 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"min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003853645.1", "gtdb_species": "s__Burkholderia sp003853645", "ani": 90.2354, "matched_fragments": 1729, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.08", "min_intra_species_ani": "96.08", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000203915.1", "gtdb_species": "s__Burkholderia ambifaria", "ani": 90.1025, "matched_fragments": 1702, "total_fragments": 2390, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.41", "min_intra_species_ani": "95.73", "mean_intra_species_af": "0.89", 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