{
    "type": "genome",
    "identifier": "GCF_902506685.1",
    "organism": "Negativicoccus succinicivorans",
    "title": "Negativicoccus succinicivorans",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "URMITE",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902506685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA6086677",
        "wgs_master": "CABWNB000000000.1",
        "refseq_category": "na",
        "taxid": "620903",
        "species_taxid": "620903",
        "organism_name": "Negativicoccus succinicivorans",
        "infraspecific_name": "strain=ADV 07/08/06-B-1388",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/12/18",
        "asm_name": "Q0888",
        "asm_submitter": "URMITE",
        "gbrs_paired_asm": "GCA_902506685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/506/685/GCF_902506685.1_Q0888",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1410725",
        "genome_size_ungapped": "1410725",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902506685.1-RS_2024_08_24",
        "annotation_date": "2024-08-24",
        "total_gene_count": "1452",
        "protein_coding_gene_count": "1373",
        "non_coding_gene_count": "69",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-12-18",
    "dateModified": "2019-12-18",
    "datePublished": "2019-12-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Negativicoccus succinicivorans"
        ],
        "sample_taxid": [
            "620903"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "0.398 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1410725",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "486190",
        "N50 (bp)": "364244",
        "Gap Ratio (%)": "0.000213",
        "GCcontent (%)": "51.1",
        "Number of CDSs": "1378",
        "Average Protein Length": "310.5",
        "Coding Ratio (%)": "91.0",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Negativicoccus succinicivorans",
                "strain": "strain=DSM 21255",
                "accession": "GCA_014207605.1",
                "taxid": 620903,
                "species_taxid": 620903,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9891,
                "matched_fragments": 459,
                "total_fragments": 466,
                "ani_threshold": 95,
                "status": "conclusive"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_902506685.1",
                "gtdb_species": "s__Negativicoccus succinicivorans",
                "ani": 100.0,
                "matched_fragments": 466,
                "total_fragments": 466,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Negativicoccaceae;g__Negativicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.21",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 6,
                "status": "conclusive"
            },
            {
                "accession": "GCA_900556745.1",
                "gtdb_species": "s__Negativicoccus sp900556745",
                "ani": 94.4768,
                "matched_fragments": 250,
                "total_fragments": 466,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Negativicoccaceae;g__Negativicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.29",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900155405.1",
                "gtdb_species": "s__Negativicoccus massiliensis",
                "ani": 93.8738,
                "matched_fragments": 420,
                "total_fragments": 466,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Veillonellales;f__Negativicoccaceae;g__Negativicoccus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.18",
                "min_intra_species_ani": "95.18",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1505006.0,
        "gc_content": 51.1,
        "coding_genes": 1274.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Negativicoccus",
        "succinicivorans"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}