{
    "type": "genome",
    "identifier": "GCF_902702935.1",
    "organism": "Corynebacterium rouxii",
    "title": "Corynebacterium rouxii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "INSTITUT PASTEUR",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902702935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5992727",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2719119",
        "species_taxid": "2719119",
        "organism_name": "Corynebacterium rouxii",
        "infraspecific_name": "strain=FRC0190",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2019/11/25",
        "asm_name": "FRC0190",
        "asm_submitter": "INSTITUT PASTEUR",
        "gbrs_paired_asm": "GCA_902702935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/702/935/GCF_902702935.1_FRC0190",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2451019",
        "genome_size_ungapped": "2451019",
        "gc_percent": "53.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902702935.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2388",
        "protein_coding_gene_count": "2238",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2019-11-25",
    "dateModified": "2019-11-25",
    "datePublished": "2019-11-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Corynebacterium rouxii"
        ],
        "sample_taxid": [
            "2719119"
        ],
        "sample_host_organism": [
            "diphtheria Nat. Ref. Center, Institut Pasteur, Paris"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "not provided"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "0.700 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 99.54,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2451019",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2451019",
        "N50 (bp)": "2451019",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.2",
        "Number of CDSs": "2327",
        "Average Protein Length": "303.4",
        "Coding Ratio (%)": "86.4",
        "Number of rRNAs": "15",
        "Number of tRNAs": "53",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Corynebacterium rouxii",
                "strain": "strain=FRC0190",
                "accession": "GCA_902702935.1",
                "taxid": 2719119,
                "species_taxid": 2719119,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 816,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Corynebacterium diphtheriae",
                "strain": "",
                "accession": "GCA_902809765.1",
                "taxid": 1717,
                "species_taxid": 1717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8993,
                "matched_fragments": 700,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium diphtheriae",
                "strain": "strain=NCTC11397",
                "accession": "GCA_001457455.1",
                "taxid": 1717,
                "species_taxid": 1717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8897,
                "matched_fragments": 699,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium diphtheriae subsp. diphtheriae",
                "strain": "strain=FDAARGOS_1554",
                "accession": "GCA_020736085.1",
                "taxid": 2315257,
                "species_taxid": 1717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8845,
                "matched_fragments": 701,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium diphtheriae",
                "strain": "strain=DSM 44123",
                "accession": "GCA_001913265.1",
                "taxid": 1717,
                "species_taxid": 1717,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.8566,
                "matched_fragments": 694,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Corynebacterium belfantii",
                "strain": "",
                "accession": "GCA_900205605.1",
                "taxid": 2014537,
                "species_taxid": 2014537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.9503,
                "matched_fragments": 671,
                "total_fragments": 817,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 99.54,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_902702935.1",
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                "ani": 100.0,
                "matched_fragments": 816,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.05",
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                "num_clustered_genomes": 346,
                "status": "-"
            },
            {
                "accession": "GCF_900187135.1",
                "gtdb_species": "s__Corynebacterium ulcerans",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.24",
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                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 38,
                "status": "-"
            },
            {
                "accession": "GCF_011612265.2",
                "gtdb_species": "s__Corynebacterium matruchotii",
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                "matched_fragments": 73,
                "total_fragments": 817,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium",
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            },
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            },
            {
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            {
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    "_bac2feature": {
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    "_genome_taxon": [
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}