{
    "type": "genome",
    "identifier": "GCF_902726545.1",
    "organism": "Yersinia artesiana",
    "title": "Yersinia artesiana",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "IP",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902726545.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA6448862",
        "wgs_master": "CACVAD000000000.1",
        "refseq_category": "na",
        "taxid": "2890315",
        "species_taxid": "2890315",
        "organism_name": "Yersinia artesiana",
        "infraspecific_name": "strain=IP42281",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/04/15",
        "asm_name": "IP42281v1",
        "asm_submitter": "IP",
        "gbrs_paired_asm": "GCA_902726545.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/726/545/GCF_902726545.1_IP42281v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4407320",
        "genome_size_ungapped": "4407320",
        "gc_percent": "48.000000",
        "replicon_count": "0",
        "scaffold_count": "111",
        "contig_count": "111",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-30",
        "total_gene_count": "4059",
        "protein_coding_gene_count": "3915",
        "non_coding_gene_count": "71",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-04-15",
    "dateModified": "2020-04-15",
    "datePublished": "2020-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Yersinia artesiana"
        ],
        "sample_taxid": [
            "2890315"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France"
        ],
        "sample_host_location_id": [],
        "data_size": "1.262 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4407320",
        "Number of Sequences": "111",
        "Longest Sequences (bp)": "189528",
        "N50 (bp)": "70392",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.8",
        "Number of CDSs": "3921",
        "Average Protein Length": "320.1",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "58",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Yersinia artesiana",
                "strain": "strain=IP42281",
                "accession": "GCA_902726545.1",
                "taxid": 2890315,
                "species_taxid": 2890315,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1414,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Yersinia proxima",
                "strain": "strain=IP37424",
                "accession": "GCA_902170785.1",
                "taxid": 2890316,
                "species_taxid": 2890316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.6842,
                "matched_fragments": 1279,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia enterocolitica subsp. enterocolitica",
                "strain": "strain=NBRC 105693",
                "accession": "GCA_001598735.1",
                "taxid": 150052,
                "species_taxid": 630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.9036,
                "matched_fragments": 1223,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia enterocolitica subsp. enterocolitica",
                "strain": "strain=NCTC12982",
                "accession": "GCA_901472495.1",
                "taxid": 150052,
                "species_taxid": 630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8874,
                "matched_fragments": 1228,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia enterocolitica",
                "strain": "strain=ATCC 9610",
                "accession": "GCA_000755055.1",
                "taxid": 630,
                "species_taxid": 630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.8593,
                "matched_fragments": 1238,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia enterocolitica subsp. palearctica",
                "strain": "strain=NCTC13769",
                "accession": "GCA_900637005.1",
                "taxid": 150053,
                "species_taxid": 630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7899,
                "matched_fragments": 1195,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia enterocolitica subsp. palearctica",
                "strain": "strain=Y11",
                "accession": "GCA_000253175.1",
                "taxid": 150053,
                "species_taxid": 630,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.7518,
                "matched_fragments": 1200,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia alsatica",
                "strain": "strain=IP38850",
                "accession": "GCA_902170305.1",
                "taxid": 2890317,
                "species_taxid": 2890317,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9461,
                "matched_fragments": 1138,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Yersinia aldovae",
                "strain": "strain=IP06005",
                "accession": "GCA_001091225.1",
                "taxid": 29483,
                "species_taxid": 29483,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6426,
                "matched_fragments": 1022,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia bockelmannii",
                "strain": "strain=S3",
                "accession": "GCA_008011855.1",
                "taxid": 2703793,
                "species_taxid": 2703793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2427,
                "matched_fragments": 374,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia entomophila",
                "strain": "strain=A1",
                "accession": "GCA_021462285.1",
                "taxid": 42906,
                "species_taxid": 42906,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1934,
                "matched_fragments": 409,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.125,
                "matched_fragments": 395,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rahnella bonaserana",
                "strain": "strain=H11b",
                "accession": "GCA_019049675.1",
                "taxid": 2816248,
                "species_taxid": 2816248,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7891,
                "matched_fragments": 378,
                "total_fragments": 1420,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_902726525.1",
                "gtdb_species": "s__Yersinia enterocolitica_H",
                "ani": 99.9673,
                "matched_fragments": 1399,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001995075.1",
                "gtdb_species": "s__Yersinia enterocolitica_F",
                "ani": 94.6894,
                "matched_fragments": 1289,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.14",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_901472495.1",
                "gtdb_species": "s__Yersinia enterocolitica",
                "ani": 93.8716,
                "matched_fragments": 1229,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.11",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 185,
                "status": "-"
            },
            {
                "accession": "GCF_900460525.1",
                "gtdb_species": "s__Yersinia kristensenii",
                "ani": 88.1504,
                "matched_fragments": 1147,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.20",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_003600645.1",
                "gtdb_species": "s__Yersinia rochesterensis",
                "ani": 88.0742,
                "matched_fragments": 1135,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.46",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_009831415.1",
                "gtdb_species": "s__Yersinia canariae",
                "ani": 87.857,
                "matched_fragments": 1180,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.93",
                "min_intra_species_ani": "98.81",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_004124235.1",
                "gtdb_species": "s__Yersinia hibernica",
                "ani": 86.5497,
                "matched_fragments": 1162,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.98",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001098625.1",
                "gtdb_species": "s__Yersinia frederiksenii_C",
                "ani": 85.8911,
                "matched_fragments": 1150,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.63",
                "min_intra_species_ani": "97.69",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 21,
                "status": "-"
            },
            {
                "accession": "GCF_000173735.1",
                "gtdb_species": "s__Yersinia aldovae",
                "ani": 85.7479,
                "matched_fragments": 990,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.00",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_000754805.1",
                "gtdb_species": "s__Yersinia frederiksenii",
                "ani": 85.5915,
                "matched_fragments": 1131,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.36",
                "min_intra_species_ani": "98.91",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 11,
                "status": "-"
            },
            {
                "accession": "GCF_001152565.1",
                "gtdb_species": "s__Yersinia pekkanenii",
                "ani": 84.824,
                "matched_fragments": 1015,
                "total_fragments": 1420,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Yersinia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.90",
                "min_intra_species_ani": "99.90",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.078,
        "cell_length": 0.265,
        "doubling_h": 0.264,
        "growth_tmp": 29.972,
        "optimum_tmp": 29.644,
        "optimum_ph": 7.6,
        "genome_size": 4575854.635,
        "gc_content": 47.407,
        "coding_genes": 4010.575,
        "rRNA16S_genes": 6.998,
        "tRNA_genes": 78.744,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.352,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.647,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.933,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.066,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Yersinia",
        "artesiana"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}