{ "type": "genome", "identifier": "GCF_902728265.1", "organism": "Chryseobacterium potabilaquae", "title": "Chryseobacterium potabilaquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "UVEG", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902728265.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6474461", "wgs_master": "CACVBR000000000.1", "refseq_category": "reference genome", "taxid": "2675057", "species_taxid": "2675057", "organism_name": "Chryseobacterium potabilaquae", "infraspecific_name": "strain=CECT 9293", "isolate": "130820 UF 26", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/01/21", "asm_name": "Chryseobacterium_CECT9293_SPAdes_Prokka", "asm_submitter": "UVEG", "gbrs_paired_asm": "GCA_902728265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/728/265/GCF_902728265.1_Chryseobacterium_CECT9293_SPAdes_Prokka", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4348941", "genome_size_ungapped": "4348941", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "149", "contig_count": "149", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902728265.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "3737", "protein_coding_gene_count": "3644", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-01-21", "dateModified": "2020-01-21", "datePublished": "2020-01-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Chryseobacterium potabilaquae" ], "sample_taxid": [ "2675057" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.206 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4348941", "Number of Sequences": "149", "Longest Sequences (bp)": "331325", "N50 (bp)": "84805", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.6", "Number of CDSs": "3557", "Average Protein Length": "335.3", "Coding Ratio (%)": "82.3", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Chryseobacterium fistulae", "strain": "strain=CECT 9393", "accession": "GCA_902729325.1", "taxid": 2675058, "species_taxid": 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572, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=ATCC 35910", "accession": "GCA_000143785.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 79.2493, "matched_fragments": 531, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium gleum", "strain": "strain=NCTC11432", "accession": "GCA_900636535.1", "taxid": 250, "species_taxid": 250, "relation_to_type": "type", "validated": true, "ani": 79.2452, "matched_fragments": 521, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium geocarposphaerae", "strain": "strain=DSM 27617", "accession": "GCA_002797535.1", "taxid": 1416776, "species_taxid": 1416776, "relation_to_type": "type", "validated": true, "ani": 79.2437, "matched_fragments": 539, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium piperi", "strain": "strain=ATCC BAA-1782", "accession": "GCA_002285635.2", "taxid": 558152, "species_taxid": 558152, "relation_to_type": "type", "validated": true, "ani": 79.2071, "matched_fragments": 546, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium defluvii", "strain": "strain=DSM 14219", "accession": "GCA_003634775.1", "taxid": 160396, "species_taxid": 160396, "relation_to_type": "type", "validated": true, "ani": 79.1877, "matched_fragments": 492, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium flavum", "strain": "strain=KCTC 12877", "accession": "GCA_003385595.1", "taxid": 415851, "species_taxid": 415851, "relation_to_type": "type", "validated": true, "ani": 79.1847, "matched_fragments": 492, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium populi", "strain": "strain=CF314", "accession": "GCA_000282115.1", "taxid": 1144316, "species_taxid": 1144316, "relation_to_type": "type", "validated": true, "ani": 79.0984, "matched_fragments": 524, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium takakiae", "strain": "strain=DSM 26898", "accession": "GCA_900129385.1", "taxid": 1302685, "species_taxid": 1302685, "relation_to_type": "type", "validated": true, "ani": 79.0929, "matched_fragments": 469, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium paridis", "strain": "strain=YIM B02567", "accession": "GCA_016595215.1", "taxid": 2800328, "species_taxid": 2800328, "relation_to_type": "type", "validated": true, "ani": 79.0896, "matched_fragments": 543, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium soli", "strain": "strain=DSM 19298", "accession": "GCA_000737705.1", "taxid": 445961, "species_taxid": 445961, "relation_to_type": "type", "validated": true, "ani": 79.0264, "matched_fragments": 502, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chryseobacterium formosense", "strain": "strain=DSM 17452", "accession": "GCA_900116415.1", "taxid": 236814, "species_taxid": 236814, "relation_to_type": "type", "validated": true, "ani": 78.5045, "matched_fragments": 460, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Riemerella columbina", "strain": "strain=DSM 16469", "accession": "GCA_000374405.1", "taxid": 103810, "species_taxid": 103810, "relation_to_type": "type", "validated": true, "ani": 76.5678, "matched_fragments": 100, "total_fragments": 1385, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chishuiella changwenlii", "strain": "strain=DSM 27989", "accession": 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