{ "type": "genome", "identifier": "GCF_902804475.1", "organism": "Flavobacterium bizetiae", "title": "Flavobacterium bizetiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902804475.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6526578", "wgs_master": "CADCSU000000000.1", "refseq_category": "na", "taxid": "2704140", "species_taxid": "2704140", "organism_name": "Flavobacterium bizetiae", "infraspecific_name": "strain=CIP 105534", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/26", "asm_name": "CIP105534", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_902804475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/804/475/GCF_902804475.1_CIP105534", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5826243", "genome_size_ungapped": "5825682", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "250", "contig_count": "250", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902804475.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4943", "protein_coding_gene_count": "4832", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-26", "dateModified": "2020-02-26", "datePublished": "2020-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium bizetiae" ], "sample_taxid": [ "2704140" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.630 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5826243", "Number of Sequences": "250", "Longest Sequences (bp)": "204435", "N50 (bp)": "49506", "Gap Ratio (%)": "0.009629", "GCcontent (%)": "34.1", "Number of CDSs": "4760", "Average Protein Length": "346.1", "Coding Ratio (%)": "84.8", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 99.9999, "matched_fragments": 1817, "total_fragments": 1825, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 99.9871, "matched_fragments": 1812, "total_fragments": 1825, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 87.9747, "matched_fragments": 1416, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 87.9388, "matched_fragments": 1422, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 18293", "accession": "GCA_002217195.1", "taxid": 362413, "species_taxid": 362413, "relation_to_type": "type", "validated": true, "ani": 86.0241, "matched_fragments": 1273, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 84.8967, "matched_fragments": 1132, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 83.1354, "matched_fragments": 1058, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium reichenbachii", "strain": "strain=DSM 21791", "accession": "GCA_002217435.1", "taxid": 362418, "species_taxid": 362418, "relation_to_type": "type", "validated": true, "ani": 82.4942, "matched_fragments": 1054, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 81.9601, "matched_fragments": 1060, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.9436, "matched_fragments": 1047, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.6429, "matched_fragments": 1079, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 76.9638, "matched_fragments": 154, "total_fragments": 1825, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902804475.1", "gtdb_species": "s__Flavobacterium bizetiae", "ani": 99.9999, "matched_fragments": 1817, "total_fragments": 1825, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.94", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_009664855.1", "gtdb_species": "s__Flavobacterium sp009664855", "ani": 89.4344, "matched_fragments": 1517, "total_fragments": 1825, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001686925.1", "gtdb_species": "s__Flavobacterium piscis", "ani": 87.9651, "matched_fragments": 1417, "total_fragments": 1825, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001422725.1", "gtdb_species": "s__Flavobacterium sp001422725", "ani": 87.1538, "matched_fragments": 1277, "total_fragments": 1825, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001975985.1", "gtdb_species": "s__Flavobacterium sp001975985", "ani": 86.9864, "matched_fragments": 1280, "total_fragments": 1825, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.326, "cell_length": 0.278, "doubling_h": 1.271, "growth_tmp": 24.705, "optimum_tmp": 25.047, "optimum_ph": 7.141, "genome_size": 3988255.815, "gc_content": 34.893, "coding_genes": 3154.048, "rRNA16S_genes": 5.145, "tRNA_genes": 58.611, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.347, "range_salinity": 0.333, "facultative_respiration": 0.049, "anaerobic_respiration": 0.019, "aerobic_respiration": 0.931, "mesophilic_range_tmp": 0.789, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.21, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "bizetiae" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }