{ "type": "genome", "identifier": "GCF_902804485.1", "organism": "Flavobacterium collinsii", "title": "Flavobacterium collinsii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902804485.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6526577", "wgs_master": "CADCST000000000.1", "refseq_category": "na", "taxid": "1114861", "species_taxid": "1114861", "organism_name": "Flavobacterium collinsii", "infraspecific_name": "na", "isolate": "CECT7796", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/02/26", "asm_name": "CECT7796", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_902804485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/804/485/GCF_902804485.1_CECT7796", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5735532", "genome_size_ungapped": "5734822", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "205", "contig_count": "205", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902804485.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4779", "protein_coding_gene_count": "4672", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-02-26", "dateModified": "2020-02-26", "datePublished": "2020-02-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium collinsii" ], "sample_taxid": [ "1114861" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": 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tructae", "strain": "strain=CCUG 60100", "accession": "GCA_002217475.1", "taxid": 1114873, "species_taxid": 1114873, "relation_to_type": "type", "validated": true, "ani": 88.1939, "matched_fragments": 1303, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 83.3946, "matched_fragments": 1056, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 83.3697, "matched_fragments": 1041, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 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1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 83.1858, "matched_fragments": 1019, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 83.1635, "matched_fragments": 1015, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 83.1201, "matched_fragments": 1042, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, 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true, "ani": 82.1683, "matched_fragments": 943, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 82.0302, "matched_fragments": 943, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 81.9696, "matched_fragments": 932, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hydrocarbonoxydans", "strain": "strain=GA093", "accession": "GCA_009789235.1", "taxid": 2683249, "species_taxid": 2683249, "relation_to_type": "type", "validated": true, "ani": 81.6204, "matched_fragments": 833, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 81.1503, "matched_fragments": 863, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.0739, "matched_fragments": 880, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 80.9567, "matched_fragments": 877, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.2552, "matched_fragments": 155, "total_fragments": 1830, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902804485.1", "gtdb_species": "s__Flavobacterium collinsii", "ani": 100.0, "matched_fragments": 1825, "total_fragments": 1830, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Flavobacterium", "collinsii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }