{
    "type": "genome",
    "identifier": "GCF_902806485.1",
    "organism": "Candidatus Frankia alpina",
    "title": "Candidatus Frankia alpina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "UMR5557",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902806485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA5240948",
        "wgs_master": "CADCWT000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2699483",
        "species_taxid": "2699483",
        "organism_name": "Candidatus Frankia alpina",
        "infraspecific_name": "na",
        "isolate": "AiOr",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/02/18",
        "asm_name": "AiOr",
        "asm_submitter": "UMR5557",
        "gbrs_paired_asm": "GCA_902806485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/806/485/GCF_902806485.1_AiOr",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5504816",
        "genome_size_ungapped": "5504816",
        "gc_percent": "71.500000",
        "replicon_count": "0",
        "scaffold_count": "669",
        "contig_count": "669",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902806485.1-RS_2024_03_13",
        "annotation_date": "2024-03-13",
        "total_gene_count": "5329",
        "protein_coding_gene_count": "4800",
        "non_coding_gene_count": "50",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-02-18",
    "dateModified": "2020-02-18",
    "datePublished": "2020-02-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Candidatus Frankia alpina"
        ],
        "sample_taxid": [
            "2699483"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [],
        "sample_host_location_id": [],
        "data_size": "1.490 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5504816",
        "Number of Sequences": "669",
        "Longest Sequences (bp)": "105201",
        "N50 (bp)": "17359",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.6",
        "Number of CDSs": "4934",
        "Average Protein Length": "286.2",
        "Coding Ratio (%)": "76.9",
        "Number of rRNAs": "3",
        "Number of tRNAs": "64",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Candidatus Frankia alpina",
                "strain": "",
                "accession": "GCA_902806485.1",
                "taxid": 2699483,
                "species_taxid": 2699483,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1533,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Frankia torreyi",
                "strain": "strain=CpI1",
                "accession": "GCA_000948395.1",
                "taxid": 1856,
                "species_taxid": 1856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.713,
                "matched_fragments": 1359,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia alni",
                "strain": "strain=ACN14a",
                "accession": "GCA_000058485.1",
                "taxid": 1859,
                "species_taxid": 1859,
                "relation_to_type": "type",
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                "ani": 89.9794,
                "matched_fragments": 1310,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia canadensis",
                "strain": "",
                "accession": "GCA_900197875.1",
                "taxid": 1836972,
                "species_taxid": 1836972,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1477,
                "matched_fragments": 1020,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia casuarinae",
                "strain": "strain=CcI3",
                "accession": "GCA_000013345.1",
                "taxid": 106370,
                "species_taxid": 106370,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7717,
                "matched_fragments": 859,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Frankia elaeagni",
                "strain": "strain=BMG5.12",
                "accession": "GCA_000374165.1",
                "taxid": 222534,
                "species_taxid": 222534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2925,
                "matched_fragments": 722,
                "total_fragments": 1548,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_902806485.1",
                "gtdb_species": "s__Frankia sp902806485",
                "ani": 100.0,
                "matched_fragments": 1533,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000262465.1",
                "gtdb_species": "s__Frankia sp000262465",
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                "matched_fragments": 1327,
                "total_fragments": 1548,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000948395.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.67",
                "min_intra_species_ani": "99.51",
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                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000058485.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.50",
                "min_intra_species_ani": "99.50",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900197875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
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                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902806475.1",
                "gtdb_species": "s__Frankia nodulisporulans",
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                "matched_fragments": 804,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.88",
                "min_intra_species_ani": "99.87",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000013345.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Frankiaceae;g__Frankia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.59",
                "min_intra_species_ani": "99.21",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Candidatus",
        "Frankia",
        "alpina"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}