{ "type": "genome", "identifier": "GCF_902825135.1", "organism": "Bartonella elizabethae F9251 = ATCC 49927", "title": "Bartonella elizabethae F9251 = ATCC 49927", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902825135.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6606220", "wgs_master": "CADEAC000000000.1", "refseq_category": "na", "taxid": "1094555", "species_taxid": "807", "organism_name": "Bartonella elizabethae F9251 = ATCC 49927", "infraspecific_name": "strain=ATCC 49927", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/19", "asm_name": "Bartonella_elizabethae_ATCC_49927", "asm_submitter": "Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France", "gbrs_paired_asm": "GCA_902825135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/825/135/GCF_902825135.1_Bartonella_elizabethae_ATCC_49927", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1962372", "genome_size_ungapped": "1962008", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902825135.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "1700", "protein_coding_gene_count": "1568", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-19", "dateModified": "2021-03-19", "datePublished": "2021-03-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Bartonella elizabethae F9251 = ATCC 49927" ], "sample_taxid": [ "1094555" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "0.549 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1962372", "Number of Sequences": "50", "Longest Sequences (bp)": "990492", "N50 (bp)": "990492", "Gap Ratio (%)": "0.018549", "GCcontent (%)": "38.3", "Number of CDSs": "1626", "Average Protein Length": "296.6", "Coding Ratio (%)": "73.7", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_902825135.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 634, "total_fragments": 634, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=F9251", "accession": "GCA_000278315.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 99.95, "matched_fragments": 630, "total_fragments": 634, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bartonella elizabethae", "strain": "strain=ATCC 49927", "accession": "GCA_000518165.1", "taxid": 807, "species_taxid": 807, "relation_to_type": "type", "validated": true, "ani": 99.9472, "matched_fragments": 620, "total_fragments": 634, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bartonella mastomydis", "strain": "strain=008", "accession": "GCA_900185775.1", "taxid": 1820002, "species_taxid": 1820002, "relation_to_type": "type", "validated": true, "ani": 95.8811, "matched_fragments": 613, "total_fragments": 634, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Bartonella kosoyi", "strain": "strain=Tel Aviv", "accession": "GCA_003606325.3", "taxid": 2133959, "species_taxid": 2133959, "relation_to_type": "type", "validated": true, "ani": 94.5869, "matched_fragments": 608, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella saheliensis", "strain": "strain=077", "accession": "GCA_902162175.1", "taxid": 1457016, "species_taxid": 1457016, "relation_to_type": "type", "validated": true, "ani": 92.0678, "matched_fragments": 496, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella krasnovii", "strain": "strain=OE 1-1", "accession": "GCA_003606345.3", "taxid": 2267275, "species_taxid": 2267275, "relation_to_type": "type", "validated": true, "ani": 91.5443, "matched_fragments": 590, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=ATCC 700727", "accession": "GCA_902825115.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.5438, "matched_fragments": 463, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella vinsonii subsp. arupensis", "strain": "strain=OK-94-513", "accession": "GCA_000278235.1", "taxid": 110578, "species_taxid": 33047, "relation_to_type": "type", "validated": true, "ani": 82.4762, "matched_fragments": 468, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella callosciuri", "strain": "strain=DSM 28538", "accession": "GCA_014203215.1", "taxid": 686223, "species_taxid": 686223, "relation_to_type": "type", "validated": true, "ani": 82.2002, "matched_fragments": 456, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_1462", "accession": "GCA_019930925.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.0568, "matched_fragments": 486, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=Houston-I", "accession": "GCA_002735245.1", "taxid": 38323, "species_taxid": 38323, "relation_to_type": "type", "validated": true, "ani": 82.0526, "matched_fragments": 472, "total_fragments": 634, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bartonella henselae", "strain": "strain=FDAARGOS_175", "accession": "GCA_001525625.2", "taxid": 38323, "species_taxid": 38323, 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"min_intra_species_af": "0.96", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_003606325.2", "gtdb_species": "s__Bartonella kosoyi", "ani": 94.5869, "matched_fragments": 608, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003606345.3", "gtdb_species": "s__Bartonella krasnovii", "ani": 91.5471, "matched_fragments": 590, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_903679515.1", "gtdb_species": "s__Bartonella gabonensis", "ani": 90.9231, "matched_fragments": 546, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196435.1", "gtdb_species": "s__Bartonella tribocorum", "ani": 90.3989, "matched_fragments": 587, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002777915.1", "gtdb_species": "s__Bartonella tribocorum_A", "ani": 90.1353, "matched_fragments": 573, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_018155095.1", "gtdb_species": "s__Bartonella queenslandensis_B", "ani": 89.9091, "matched_fragments": 559, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000312585.1", 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massiliensis", "ani": 89.1348, "matched_fragments": 563, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000278295.1", "gtdb_species": "s__Bartonella taylorii", "ani": 82.7509, "matched_fragments": 495, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.74", "min_intra_species_ani": "97.76", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000312545.1", "gtdb_species": "s__Bartonella senegalensis", "ani": 82.1903, "matched_fragments": 473, "total_fragments": 634, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Bartonella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.315, "cell_length": 0.071, "doubling_h": 0.627, "growth_tmp": 37.0, "optimum_tmp": 33.909, "optimum_ph": 7.366, "genome_size": 1944297.8, "gc_content": 38.29, "coding_genes": 1584.487, "rRNA16S_genes": 2.0, "tRNA_genes": 42.703, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.583, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.687, "coccus_cell_shape": 0.062, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.25, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bartonella", "elizabethae", "F9251", "=", "ATCC", "49927" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }