{ "type": "genome", "identifier": "GCF_902825375.1", "organism": "Nocardiopsis dassonvillei subsp. crassaminis", "title": "Nocardiopsis dassonvillei subsp. crassaminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Industrial Biotechnology Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902825375.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6623700", "wgs_master": "CADEAX000000000.1", "refseq_category": "na", "taxid": "2580523", "species_taxid": "2014", "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "infraspecific_name": "strain=D1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "D1", "asm_submitter": "Centre for Industrial Biotechnology Studies", "gbrs_paired_asm": "GCA_902825375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/825/375/GCF_902825375.1_D1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6655292", "genome_size_ungapped": "6655292", "gc_percent": "72.500000", "replicon_count": "0", "scaffold_count": "697", "contig_count": "697", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902825375.1-RS_2024_03_22", "annotation_date": "2024-03-22", "total_gene_count": "6124", "protein_coding_gene_count": "5785", "non_coding_gene_count": "62", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis dassonvillei subsp. crassaminis" ], "sample_taxid": [ "2580523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cuba" ], "sample_host_location_id": [], "data_size": "1.787 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6655292", "Number of Sequences": "697", "Longest Sequences (bp)": "74029", "N50 (bp)": "16400", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "72.4", "Number of CDSs": "5451", "Average Protein Length": "302.9", "Coding Ratio (%)": "74.4", "Number of rRNAs": "3", "Number of tRNAs": "77", "Number of CRISPRs": "17" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis dassonvillei subsp. crassaminis", "strain": "strain=D1", "accession": "GCA_902825375.1", "taxid": 2580523, "species_taxid": 2014, 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"ani": 97.7731, "matched_fragments": 1693, "total_fragments": 1877, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=ATCC 23612", "accession": "GCA_012396365.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 94.3195, "matched_fragments": 1586, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis alborubida", "strain": "strain=NBRC 13392", "accession": "GCA_001552695.1", "taxid": 146802, "species_taxid": 146802, "relation_to_type": "type", "validated": true, "ani": 94.3021, "matched_fragments": 1551, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis deserti", "strain": "strain=H13", "accession": "GCA_008638355.1", "taxid": 2605988, "species_taxid": 2605988, "relation_to_type": "type", "validated": true, "ani": 94.2086, "matched_fragments": 1600, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 88.4023, "matched_fragments": 1345, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis quinghaiensis", "strain": "strain=YIM 28A4", "accession": "GCA_008638365.1", "taxid": 464995, "species_taxid": 464995, "relation_to_type": "type", "validated": true, "ani": 88.2105, "matched_fragments": 1270, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 83.7495, "matched_fragments": 1174, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis kunsanensis", "strain": "strain=DSM 44524", "accession": "GCA_000340965.1", "taxid": 141693, "species_taxid": 141693, "relation_to_type": "type", "validated": true, "ani": 81.8215, "matched_fragments": 912, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida cellulosilytica", "strain": "strain=TB100", "accession": "GCA_001517975.1", "taxid": 144786, "species_taxid": 144786, "relation_to_type": "type", "validated": true, "ani": 80.0608, "matched_fragments": 668, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomonospora litoralis", "strain": "strain=M2", "accession": "GCA_004323735.1", "taxid": 2498135, "species_taxid": 2498135, "relation_to_type": "type", "validated": true, "ani": 79.8359, "matched_fragments": 774, "total_fragments": 1877, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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