{ "type": "genome", "identifier": "GCF_902825405.1", "organism": "Micromonospora maritima", "title": "Micromonospora maritima", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Industrial Biotechnology Studies", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902825405.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6623701", "wgs_master": "CADEAU000000000.1", "refseq_category": "na", "taxid": "986711", "species_taxid": "986711", "organism_name": "Micromonospora maritima", "infraspecific_name": "na", "isolate": "DSM 45782", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/04/02", "asm_name": "DSM 45782", "asm_submitter": "Centre for Industrial Biotechnology Studies", "gbrs_paired_asm": "GCA_902825405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/825/405/GCF_902825405.1_DSM_45782", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6233813", "genome_size_ungapped": "6233813", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "987", "contig_count": "987", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902825405.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6692", "protein_coding_gene_count": "6071", "non_coding_gene_count": "114", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-04-02", "dateModified": "2020-04-02", "datePublished": "2020-04-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora maritima" ], "sample_taxid": [ "986711" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "1.649 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6233813", "Number of Sequences": "987", "Longest Sequences (bp)": "68499", "N50 (bp)": "10392", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.2", "Number of CDSs": "5318", "Average Protein Length": "287.1", "Coding Ratio (%)": "73.5", "Number of rRNAs": "3", "Number of tRNAs": "121", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora maritima", "strain": "", "accession": "GCA_902825405.1", "taxid": 986711, "species_taxid": 986711, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1569, "total_fragments": 1588, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 94.6859, "matched_fragments": 1386, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 90.5875, "matched_fragments": 1267, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 90.4356, "matched_fragments": 1276, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" 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"accession": "GCA_900091545.1", "taxid": 1881, "species_taxid": 1881, "relation_to_type": "type", "validated": true, "ani": 86.4265, "matched_fragments": 1081, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora mirobrigensis", "strain": "strain=DSM 44830", "accession": "GCA_900091555.1", "taxid": 262898, "species_taxid": 262898, "relation_to_type": "type", "validated": true, "ani": 86.1584, "matched_fragments": 1138, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora palomenae", "strain": "strain=DSM 102131", "accession": "GCA_007829925.1", "taxid": 1461247, "species_taxid": 1461247, "relation_to_type": "type", "validated": true, "ani": 86.0466, "matched_fragments": 1140, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 85.5432, "matched_fragments": 933, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 85.0892, "matched_fragments": 1100, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 84.7976, "matched_fragments": 1013, "total_fragments": 1588, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phaseoli", "strain": "strain=NBRC 110907", "accession": "GCA_016863675.1", "taxid": 1144548, "species_taxid": 1144548, 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