{ "type": "genome", "identifier": "GCF_902832765.1", "organism": "Burkholderia glumae LMG 2196 = ATCC 33617", "title": "Burkholderia glumae LMG 2196 = ATCC 33617", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CARDIFF SCHOOL OF BIOSCIENCES", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902832765.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6503528", "wgs_master": "CADFCU000000000.1", "refseq_category": "na", "taxid": "1176492", "species_taxid": "337", "organism_name": "Burkholderia glumae LMG 2196 = ATCC 33617", "infraspecific_name": "strain=LMG 2196", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/09", "asm_name": "Burkholderia glumae LMG 2196", "asm_submitter": "CARDIFF SCHOOL OF BIOSCIENCES", "gbrs_paired_asm": "GCA_902832765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/832/765/GCF_902832765.1_Burkholderia_glumae_LMG_2196", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6662149", "genome_size_ungapped": "6661748", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "137", "contig_count": "137", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902832765.1-RS_2024_04_20", "annotation_date": "2024-04-20", "total_gene_count": "5989", "protein_coding_gene_count": "5680", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-09", "dateModified": "2020-06-09", "datePublished": "2020-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia glumae LMG 2196 = ATCC 33617" ], "sample_taxid": [ "1176492" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.801 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6662149", "Number of Sequences": "137", "Longest Sequences (bp)": "583358", "N50 (bp)": "162494", "Gap Ratio (%)": "0.006064", "GCcontent (%)": "68.3", "Number of CDSs": "5831", "Average Protein Length": "321.3", "Coding Ratio (%)": "84.4", "Number of rRNAs": "4", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia glumae", "strain": "strain=LMG 2196", "accession": "GCA_902832765.1", "taxid": 337, "species_taxid": 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95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 83.1565, "matched_fragments": 1219, "total_fragments": 2163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 81.0118, "matched_fragments": 1011, "total_fragments": 2163, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 76.0566, "matched_fragments": 350, "total_fragments": 2163, "ani_threshold": 95, "status": "below_threshold" }, { 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