{ "type": "genome", "identifier": "GCF_902833085.1", "organism": "Burkholderia ubonensis", "title": "Burkholderia ubonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CARDIFF SCHOOL OF BIOSCIENCES", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902833085.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6503568", "wgs_master": "CADFEB000000000.1", "refseq_category": "na", "taxid": "101571", "species_taxid": "101571", "organism_name": "Burkholderia ubonensis", "infraspecific_name": "strain=LMG 20358", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/09", "asm_name": "ASM90283308v1", "asm_submitter": "CARDIFF SCHOOL OF BIOSCIENCES", "gbrs_paired_asm": "GCA_902833085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/833/085/GCF_902833085.1_ASM90283308v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7766136", "genome_size_ungapped": "7765766", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2023-04-21", "total_gene_count": "6976", "protein_coding_gene_count": "6779", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-09", "dateModified": "2020-06-09", "datePublished": "2020-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia ubonensis" ], "sample_taxid": [ "101571" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia ubonensis", "strain": "", "accession": "GCA_902499185.1", "taxid": 101571, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 99.9661, "matched_fragments": 2467, "total_fragments": 2574, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002362295.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 94.7482, "matched_fragments": 2051, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia ubonensis subsp. mesacidophila", "strain": "strain=ATCC 31433", "accession": "GCA_002097715.1", "taxid": 265293, "species_taxid": 101571, "relation_to_type": "type", "validated": true, "ani": 94.7453, "matched_fragments": 2124, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia stagnalis", "strain": "strain=LMG 28156", "accession": "GCA_902830275.1", "taxid": 1503054, "species_taxid": 1503054, "relation_to_type": "type", "validated": true, "ani": 91.3024, "matched_fragments": 1955, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 88.9288, "matched_fragments": 1623, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "strain=DSM 16086", "accession": "GCA_016836725.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 88.3923, "matched_fragments": 1704, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 83.6466, "matched_fragments": 1397, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 81.7949, "matched_fragments": 1180, "total_fragments": 2574, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000959245.1", "gtdb_species": "s__Burkholderia ubonensis", "ani": 96.6206, "matched_fragments": 2106, "total_fragments": 2574, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Burkholderia", "ubonensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }