{
    "type": "genome",
    "identifier": "GCF_902833685.1",
    "organism": "Paraburkholderia hospita",
    "title": "Paraburkholderia hospita",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CARDIFF SCHOOL OF BIOSCIENCES",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_902833685.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMEA6503611",
        "wgs_master": "CADFGJ000000000.1",
        "refseq_category": "na",
        "taxid": "169430",
        "species_taxid": "169430",
        "organism_name": "Paraburkholderia hospita",
        "infraspecific_name": "strain=LMG 20598",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2020/06/09",
        "asm_name": "ASM90283368v1",
        "asm_submitter": "CARDIFF SCHOOL OF BIOSCIENCES",
        "gbrs_paired_asm": "GCA_902833685.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/833/685/GCF_902833685.1_ASM90283368v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "11250165",
        "genome_size_ungapped": "11249506",
        "gc_percent": "62.000000",
        "replicon_count": "0",
        "scaffold_count": "136",
        "contig_count": "136",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_902833685.1-RS_2024_04_20",
        "annotation_date": "2024-04-20",
        "total_gene_count": "10417",
        "protein_coding_gene_count": "10039",
        "non_coding_gene_count": "68",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2020-06-09",
    "dateModified": "2020-06-09",
    "datePublished": "2020-06-09",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paraburkholderia hospita"
        ],
        "sample_taxid": [
            "169430"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Belgium"
        ],
        "sample_host_location_id": [],
        "data_size": "3.134 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "11250165",
        "Number of Sequences": "136",
        "Longest Sequences (bp)": "673831",
        "N50 (bp)": "202916",
        "Gap Ratio (%)": "0.005920",
        "GCcontent (%)": "61.9",
        "Number of CDSs": "10266",
        "Average Protein Length": "302.5",
        "Coding Ratio (%)": "82.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "61",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Paraburkholderia hospita",
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 3686,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Paraburkholderia hospita",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraburkholderia hospita",
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                "status": "inconclusive"
            },
            {
                "organism_name": "Paraburkholderia terrae",
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                "taxid": 311230,
                "species_taxid": 311230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.2298,
                "matched_fragments": 2627,
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                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraburkholderia terrae",
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                "species_taxid": 311230,
                "relation_to_type": "type",
                "validated": true,
                "ani": 95.198,
                "matched_fragments": 2724,
                "total_fragments": 3693,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Paraburkholderia azotifigens",
                "strain": "strain=NF 2-5-3",
                "accession": "GCA_007995085.1",
                "taxid": 2057004,
                "species_taxid": 2057004,
                "relation_to_type": "type",
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                "ani": 87.9734,
                "matched_fragments": 2324,
                "total_fragments": 3693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia gardini",
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                "accession": "GCA_907164575.1",
                "taxid": 2823469,
                "species_taxid": 2823469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.393,
                "matched_fragments": 1249,
                "total_fragments": 3693,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia podalyriae",
                "strain": "strain=WC7.3b",
                "accession": "GCA_014397785.1",
                "taxid": 1938811,
                "species_taxid": 1938811,
                "relation_to_type": "type",
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                "ani": 82.2535,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia saeva",
                "strain": "strain=LMG 31841",
                "accession": "GCA_907164555.1",
                "taxid": 2777537,
                "species_taxid": 2777537,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.2026,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paraburkholderia kirstenboschensis",
                "strain": "strain=KB15",
                "accession": "GCA_001636975.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 81.499,
                "matched_fragments": 1190,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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        "gtdb_result": [
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                "accession": "GCF_002902965.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
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                "mean_intra_species_ani": "98.45",
                "min_intra_species_ani": "97.70",
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                "num_clustered_genomes": 14,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
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                "num_clustered_genomes": 3,
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            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Paraburkholderia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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            {
                "accession": "GCF_013426895.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
            {
                "accession": "GCF_002902945.1",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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    "_genome_taxon": [
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        "hospita"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}