{ "type": "genome", "identifier": "GCF_902833725.1", "organism": "Paraburkholderia mimosarum", "title": "Paraburkholderia mimosarum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CARDIFF SCHOOL OF BIOSCIENCES", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902833725.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6503614", "wgs_master": "CADFGK000000000.1", "refseq_category": "na", "taxid": "312026", "species_taxid": "312026", "organism_name": "Paraburkholderia mimosarum", "infraspecific_name": "strain=LMG 23256", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/09", "asm_name": "ASM90283372v1", "asm_submitter": "CARDIFF SCHOOL OF BIOSCIENCES", "gbrs_paired_asm": "GCA_902833725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/833/725/GCF_902833725.1_ASM90283372v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8601927", "genome_size_ungapped": "8601294", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "266", "contig_count": "266", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902833725.1-RS_2024_04_20", "annotation_date": "2024-04-20", "total_gene_count": "7962", "protein_coding_gene_count": "7385", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-09", "dateModified": "2020-06-09", "datePublished": "2020-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia mimosarum" ], "sample_taxid": [ "312026" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "2.390 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8601927", "Number of Sequences": "266", "Longest Sequences (bp)": "633301", "N50 (bp)": "198630", "Gap Ratio (%)": "0.007475", "GCcontent (%)": "63.8", "Number of CDSs": "7724", "Average Protein Length": "305.3", "Coding Ratio (%)": "82.2", "Number of rRNAs": "2", "Number of tRNAs": "70", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia mimosarum", "strain": "strain=LMG 23256", "accession": "GCA_902833725.1", "taxid": 312026, "species_taxid": 312026, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2755, 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"below_threshold" }, { "organism_name": "Paraburkholderia acidiphila", "strain": "strain=7Q-K02", "accession": "GCA_009789655.1", "taxid": 2571747, "species_taxid": 2571747, "relation_to_type": "type", "validated": true, "ani": 88.5522, "matched_fragments": 1648, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, "relation_to_type": "type", "validated": true, "ani": 88.3792, "matched_fragments": 1711, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia lycopersici", "strain": "strain=TNe-862", "accession": "GCA_900096975.1", "taxid": 416944, "species_taxid": 416944, "relation_to_type": "type", "validated": true, "ani": 88.1785, "matched_fragments": 1519, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia pallida", "strain": "strain=7MH5", "accession": "GCA_004524855.1", "taxid": 2547399, "species_taxid": 2547399, "relation_to_type": "type", "validated": true, "ani": 85.1582, "matched_fragments": 1513, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 85.0829, "matched_fragments": 1496, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sacchari", "strain": "strain=LMG 19450", "accession": "GCA_902833715.1", "taxid": 159450, "species_taxid": 159450, "relation_to_type": "type", "validated": true, "ani": 85.0596, "matched_fragments": 1452, "total_fragments": 2760, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia sacchari", "strain": 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