{ "type": "genome", "identifier": "GCF_902833845.1", "organism": "Robbsia andropogonis", "title": "Robbsia andropogonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "CARDIFF SCHOOL OF BIOSCIENCES", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902833845.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6503624", "wgs_master": "CADFGU000000000.1", "refseq_category": "na", "taxid": "28092", "species_taxid": "28092", "organism_name": "Robbsia andropogonis", "infraspecific_name": "strain=LMG 2129", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/09", "asm_name": "ASM90283384v1", "asm_submitter": "CARDIFF SCHOOL OF BIOSCIENCES", "gbrs_paired_asm": "GCA_902833845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/833/845/GCF_902833845.1_ASM90283384v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6329108", "genome_size_ungapped": "6328863", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "75", "contig_count": "75", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902833845.1-RS_2024_04_20", "annotation_date": "2024-04-20", "total_gene_count": "5474", "protein_coding_gene_count": "5155", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-09", "dateModified": "2020-06-09", "datePublished": "2020-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Robbsia andropogonis" ], "sample_taxid": [ "28092" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.790 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6329108", "Number of Sequences": "75", "Longest Sequences (bp)": "1086384", "N50 (bp)": "340675", "Gap Ratio (%)": "0.003887", "GCcontent (%)": "58.9", "Number of CDSs": "5387", "Average Protein Length": "330.8", "Coding Ratio (%)": "84.5", "Number of rRNAs": "2", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Robbsia andropogonis", "strain": "strain=LMG 2129", "accession": "GCA_902833845.1", "taxid": 28092, "species_taxid": 28092, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2079, "total_fragments": 2080, "ani_threshold": 95, "status": 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"strain=AMMD", "accession": "GCA_000203915.1", "taxid": 152480, "species_taxid": 152480, "relation_to_type": "type", "validated": true, "ani": 77.4531, "matched_fragments": 298, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia pseudomultivorans", "strain": "", "accession": "GCA_902499075.1", "taxid": 1207504, "species_taxid": 1207504, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4032, "matched_fragments": 286, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ginsengisoli", "strain": "strain=NBRC 100965", "accession": "GCA_000739735.1", "taxid": 311231, "species_taxid": 311231, "relation_to_type": "type", "validated": true, "ani": 77.386, "matched_fragments": 274, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia concitans", "strain": "", "accession": "GCA_001544615.2", "taxid": 1777133, "species_taxid": 1777133, "relation_to_type": "type", "validated": true, "ani": 77.3835, "matched_fragments": 246, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=CAMPA 1040", "accession": "GCA_002099195.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 77.3732, "matched_fragments": 292, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 77.3715, "matched_fragments": 265, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia solitsugae", "strain": "strain=1N", "accession": "GCA_013177695.1", "taxid": 2675748, "species_taxid": 2675748, 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77.3333, "matched_fragments": 284, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=LMG 29660", "accession": "GCA_902859845.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 77.3137, "matched_fragments": 296, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 77.277, "matched_fragments": 278, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia anthina", "strain": "", "accession": "GCA_902498995.1", "taxid": 179879, "species_taxid": 179879, "relation_to_type": "suspected-type", "validated": true, "ani": 77.2567, "matched_fragments": 301, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia terrestris", "strain": "", "accession": "GCA_001544515.2", "taxid": 1226301, "species_taxid": 1226301, "relation_to_type": "type", "validated": true, "ani": 77.2272, "matched_fragments": 270, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia hiiakae", "strain": "strain=LMG 27952", "accession": "GCA_904848665.1", "taxid": 1081782, "species_taxid": 1081782, "relation_to_type": "type", "validated": true, "ani": 77.2266, "matched_fragments": 252, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia humi", "strain": "", "accession": "GCA_001544475.2", "taxid": 326474, "species_taxid": 326474, "relation_to_type": "type", "validated": true, "ani": 77.1846, "matched_fragments": 283, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia podalyriae", "strain": "strain=WC7.3b", "accession": "GCA_014397785.1", "taxid": 1938811, "species_taxid": 1938811, "relation_to_type": "type", "validated": true, "ani": 77.1772, "matched_fragments": 291, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia heleia", "strain": "strain=NBRC 101817", "accession": "GCA_000739775.1", "taxid": 634127, "species_taxid": 634127, "relation_to_type": "type", "validated": true, "ani": 77.1598, "matched_fragments": 269, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia azotifigens", "strain": "strain=NF 2-5-3", "accession": "GCA_007995085.1", "taxid": 2057004, "species_taxid": 2057004, "relation_to_type": "type", "validated": true, "ani": 77.0176, "matched_fragments": 296, "total_fragments": 2080, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia cordobensis", "strain": 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2080, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001718835.1", "gtdb_species": "s__Burkholderia cepacia_F", "ani": 77.4086, "matched_fragments": 298, "total_fragments": 2080, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Burkholderia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902499075.1", "gtdb_species": "s__Burkholderia pseudomultivorans", "ani": 77.4014, "matched_fragments": 287, "total_fragments": 2080, 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