{ "type": "genome", "identifier": "GCF_902859685.1", "organism": "Achromobacter piechaudii", "title": "Achromobacter piechaudii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859685.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6647238", "wgs_master": "CADIJS000000000.1", "refseq_category": "reference genome", "taxid": "72556", "species_taxid": "72556", "organism_name": "Achromobacter piechaudii", "infraspecific_name": "strain=LMG 1873", "isolate": "LMG 1873", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 1873", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859685.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/685/GCF_902859685.1_LMG_1873", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6333190", "genome_size_ungapped": "6333190", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902859685.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5769", "protein_coding_gene_count": "5677", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter piechaudii" ], "sample_taxid": [ "72556" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.740 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6333190", "Number of Sequences": "12", "Longest Sequences (bp)": "1762275", "N50 (bp)": "1456087", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.8", "Number of CDSs": "5748", "Average Protein Length": "332.0", "Coding Ratio (%)": "90.4", "Number of rRNAs": "1", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2106, "total_fragments": 2106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=NBRC 102461", "accession": "GCA_001571245.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 99.9907, "matched_fragments": 2092, "total_fragments": 2106, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 88.4621, "matched_fragments": 1674, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=DSM 23806", "accession": "GCA_002812705.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 88.3906, "matched_fragments": 1710, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter kerstersii", "strain": "strain=LMG 3441", "accession": "GCA_902859595.1", "taxid": 1353890, "species_taxid": 1353890, "relation_to_type": "type", "validated": true, "ani": 87.0582, "matched_fragments": 1686, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=LMG 26219", "accession": "GCA_902859635.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 86.9373, "matched_fragments": 1582, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 86.9123, "matched_fragments": 1590, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 86.9075, "matched_fragments": 1597, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 85.8114, "matched_fragments": 1473, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.1069, "matched_fragments": 1460, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 84.4474, "matched_fragments": 1406, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 81.5729, "matched_fragments": 835, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 77.3778, "matched_fragments": 449, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia perseverans", "strain": "strain=INN12", "accession": "GCA_022870505.1", "taxid": 2615214, "species_taxid": 2615214, "relation_to_type": "type", "validated": true, "ani": 76.7315, "matched_fragments": 438, "total_fragments": 2106, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001571245.1", "gtdb_species": "s__Achromobacter piechaudii", "ani": 99.9907, "matched_fragments": 2092, "total_fragments": 2106, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.00", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 8, "status": "conclusive" }, { "accession": "GCF_003600685.1", "gtdb_species": "s__Achromobacter spanius_B", "ani": 89.2353, "matched_fragments": 1718, "total_fragments": 2106, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002209535.1", "gtdb_species": "s__Achromobacter marplatensis", "ani": 86.9154, "matched_fragments": 1589, "total_fragments": 2106, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_012928505.1", "gtdb_species": "s__Achromobacter sp012928505", "ani": 86.7356, "matched_fragments": 1563, "total_fragments": 2106, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "piechaudii" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }