{ "type": "genome", "identifier": "GCF_902859705.1", "organism": "Achromobacter deleyi", "title": "Achromobacter deleyi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859705.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6647249", "wgs_master": "CADIJO000000000.1", "refseq_category": "reference genome", "taxid": "1353891", "species_taxid": "1353891", "organism_name": "Achromobacter deleyi", "infraspecific_name": "strain=LMG 3458", "isolate": "LMG 3458", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 3458", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/705/GCF_902859705.1_LMG_3458", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6809508", "genome_size_ungapped": "6809508", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902859705.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6324", "protein_coding_gene_count": "6212", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter deleyi" ], "sample_taxid": [ "1353891" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Denmark" ], "sample_host_location_id": [], "data_size": "1.860 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6809508", "Number of Sequences": "71", "Longest Sequences (bp)": "583542", "N50 (bp)": "234996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.8", "Number of CDSs": "6206", "Average Protein Length": "327.7", "Coding Ratio (%)": "89.6", "Number of rRNAs": "2", "Number of tRNAs": "56", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2230, "total_fragments": 2233, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 89.3826, "matched_fragments": 1727, "total_fragments": 2233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 88.9333, "matched_fragments": 1742, "total_fragments": 2233, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 88.8858, "matched_fragments": 1730, "total_fragments": 2233, "ani_threshold": 95, "status": "below_threshold" }, { 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"98.99", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_014170305.1", "gtdb_species": "s__Achromobacter sp014170305", "ani": 91.1216, "matched_fragments": 1799, "total_fragments": 2233, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859645.1", "gtdb_species": "s__Achromobacter insuavis", "ani": 89.3681, "matched_fragments": 1728, "total_fragments": 2233, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.6014, "mean_intra_species_ani": "99.48", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002885955.2", "gtdb_species": "s__Achromobacter pulmonis_A", "ani": 86.1842, "matched_fragments": 1395, "total_fragments": 2233, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 30.807, "optimum_tmp": 29.833, "optimum_ph": null, "genome_size": 6480678.912, "gc_content": 65.825, "coding_genes": 5804.816, "rRNA16S_genes": 3.5, "tRNA_genes": 57.375, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 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