{ "type": "genome", "identifier": "GCF_902859725.1", "organism": "Achromobacter mucicolens", "title": "Achromobacter mucicolens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859725.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6647240", "wgs_master": "CADIJP000000000.1", "refseq_category": "na", "taxid": "1389922", "species_taxid": "1389922", "organism_name": "Achromobacter mucicolens", "infraspecific_name": "strain=LMG 26685", "isolate": "LMG 26685", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 26685", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/725/GCF_902859725.1_LMG_26685", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5870249", "genome_size_ungapped": "5870249", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902859725.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5459", "protein_coding_gene_count": "5351", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter mucicolens" ], "sample_taxid": [ "1389922" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.617 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5870249", "Number of Sequences": "52", "Longest Sequences (bp)": "412187", "N50 (bp)": "262181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.9", "Number of CDSs": "5363", "Average Protein Length": "327.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "4", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter mucicolens", "strain": "strain=LMG 26685", "accession": "GCA_902859725.1", "taxid": 1389922, "species_taxid": 1389922, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1928, "total_fragments": 1932, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter animicus", "strain": "strain=LMG 26690", "accession": "GCA_902859585.1", "taxid": 1389935, "species_taxid": 1389935, "relation_to_type": "type", "validated": true, "ani": 90.5795, "matched_fragments": 1720, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter anxifer", "strain": "strain=LMG 26857", "accession": "GCA_903652925.1", "taxid": 1287737, "species_taxid": 1287737, "relation_to_type": "type", "validated": true, "ani": 85.922, "matched_fragments": 1381, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 85.8425, "matched_fragments": 1327, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter aegrifaciens", "strain": "strain=LMG 26852", "accession": "GCA_902859735.1", "taxid": 1287736, "species_taxid": 1287736, "relation_to_type": "type", "validated": true, "ani": 85.8161, "matched_fragments": 1353, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=LMG 1231", "accession": "GCA_902859715.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 85.6837, "matched_fragments": 1349, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=FDAARGOS_786", "accession": "GCA_013267395.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 85.602, "matched_fragments": 1375, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter denitrificans", "strain": "strain=NBRC 15125", "accession": "GCA_001571365.1", "taxid": 32002, "species_taxid": 32002, "relation_to_type": "type", "validated": true, "ani": 85.5952, "matched_fragments": 1365, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.4974, "matched_fragments": 1352, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.4771, "matched_fragments": 1355, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter ruhlandii", "strain": "strain=LMG 1866", "accession": "GCA_902859695.1", "taxid": 72557, "species_taxid": 72557, "relation_to_type": "type", "validated": true, "ani": 85.4732, "matched_fragments": 1332, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.4478, "matched_fragments": 1354, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 85.4402, "matched_fragments": 1430, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=LMG 26219", "accession": "GCA_902859635.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 85.4241, "matched_fragments": 1414, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 85.3747, "matched_fragments": 1424, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter agilis", "strain": "strain=LMG 3411", "accession": "GCA_900496965.1", "taxid": 1353888, "species_taxid": 1353888, "relation_to_type": "type", "validated": true, "ani": 85.1178, "matched_fragments": 1377, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=NBRC 102461", "accession": "GCA_001571245.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 85.0919, "matched_fragments": 1427, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 85.0497, "matched_fragments": 1436, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter kerstersii", "strain": "strain=LMG 3441", "accession": "GCA_902859595.1", "taxid": 1353890, "species_taxid": 1353890, "relation_to_type": "type", "validated": true, "ani": 84.9737, "matched_fragments": 1427, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 84.9635, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 77.3068, "matched_fragments": 380, "total_fragments": 1932, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902859725.1", "gtdb_species": "s__Achromobacter mucicolens", "ani": 100.0, "matched_fragments": 1928, "total_fragments": 1932, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.28", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": 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"bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "mucicolens" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }