{ "type": "genome", "identifier": "GCF_902859765.1", "organism": "Achromobacter pulmonis", "title": "Achromobacter pulmonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859765.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6647242", "wgs_master": "CADIJV000000000.1", "refseq_category": "na", "taxid": "1389932", "species_taxid": "1389932", "organism_name": "Achromobacter pulmonis", "infraspecific_name": "strain=LMG 26696", "isolate": "LMG 26696", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 26696", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/765/GCF_902859765.1_LMG_26696", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5673430", "genome_size_ungapped": "5673430", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902859765.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "5335", "protein_coding_gene_count": "5200", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter pulmonis" ], "sample_taxid": [ "1389932" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Belgium" ], "sample_host_location_id": [], "data_size": "1.551 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5673430", "Number of Sequences": "91", "Longest Sequences (bp)": "371890", "N50 (bp)": "139658", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "5198", "Average Protein Length": "322.7", "Coding Ratio (%)": "88.7", "Number of rRNAs": "4", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter pulmonis", "strain": "strain=LMG 26696", "accession": "GCA_902859765.1", "taxid": 1389932, "species_taxid": 1389932, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1844, "total_fragments": 1851, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter ruhlandii", "strain": "strain=LMG 1866", "accession": "GCA_902859695.1", "taxid": 72557, "species_taxid": 72557, "relation_to_type": "type", "validated": true, "ani": 91.3141, "matched_fragments": 1624, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insuavis", "strain": "strain=LMG 26845", "accession": "GCA_902859645.1", "taxid": 1287735, "species_taxid": 1287735, "relation_to_type": "type", "validated": true, "ani": 91.0678, "matched_fragments": 1538, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 91.057, "matched_fragments": 1612, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NCTC10807", "accession": "GCA_001457475.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 91.0344, "matched_fragments": 1605, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=FDAARGOS_789", "accession": "GCA_013343135.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 91.011, "matched_fragments": 1604, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=NBRC 15126", "accession": "GCA_001598595.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 90.9993, "matched_fragments": 1606, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 84.7081, "matched_fragments": 1319, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8626, "matched_fragments": 853, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 78.1889, "matched_fragments": 329, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cupriavidus numazuensis", "strain": "strain=LMG 26411", "accession": "GCA_905397435.1", "taxid": 221992, "species_taxid": 221992, "relation_to_type": "type", "validated": true, "ani": 77.9352, "matched_fragments": 472, "total_fragments": 1851, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_902859765.1", "gtdb_species": "s__Achromobacter pulmonis", "ani": 100.0, "matched_fragments": 1844, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.40", "min_intra_species_ani": "99.40", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_902859695.1", "gtdb_species": "s__Achromobacter ruhlandii", "ani": 91.3046, "matched_fragments": 1625, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0063, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCF_016127315.1", "gtdb_species": "s__Achromobacter insuavis_A", "ani": 91.2144, "matched_fragments": 1590, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.6014, "mean_intra_species_ani": "97.14", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_902859645.1", "gtdb_species": "s__Achromobacter insuavis", "ani": 91.1001, "matched_fragments": 1535, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.6014, "mean_intra_species_ani": "99.48", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001457475.1", "gtdb_species": "s__Achromobacter xylosoxidans", "ani": 91.0206, "matched_fragments": 1606, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.72", "min_intra_species_ani": "96.70", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.87", "num_clustered_genomes": 75, "status": "-" }, { "accession": "GCF_902859745.1", "gtdb_species": "s__Achromobacter dolens", "ani": 90.8359, "matched_fragments": 1538, "total_fragments": 1851, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0063, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "99.03", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 29.833, "optimum_ph": null, "genome_size": 6480678.912, "gc_content": 65.825, "coding_genes": 5804.816, "rRNA16S_genes": 3.5, "tRNA_genes": 57.375, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "pulmonis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }