{ "type": "genome", "identifier": "GCF_902859805.1", "organism": "Paraburkholderia sediminicola", "title": "Paraburkholderia sediminicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859805.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6678265", "wgs_master": "CADIKC000000000.1", "refseq_category": "reference genome", "taxid": "458836", "species_taxid": "458836", "organism_name": "Paraburkholderia sediminicola", "infraspecific_name": "strain=LMG 24238", "isolate": "LMG 24238", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 24238", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/805/GCF_902859805.1_LMG_24238", 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"sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.416 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8638003", "Number of Sequences": "40", "Longest Sequences (bp)": "1939019", "N50 (bp)": "513202", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.4", "Number of CDSs": "7634", "Average Protein Length": "323.2", "Coding Ratio (%)": "85.7", "Number of rRNAs": "2", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia sediminicola", "strain": "strain=LMG 24238", "accession": "GCA_902859805.1", "taxid": 458836, "species_taxid": 458836, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2857, "total_fragments": 2860, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paraburkholderia aspalathi", "strain": "strain=LMG 27731", "accession": "GCA_900116445.1", "taxid": 1324617, "species_taxid": 1324617, "relation_to_type": "type", "validated": true, "ani": 94.0324, "matched_fragments": 2346, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 93.9932, "matched_fragments": 2259, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia madseniana", "strain": "strain=RP11", "accession": "GCA_009690905.1", "taxid": 2599607, "species_taxid": 2599607, "relation_to_type": "type", "validated": true, "ani": 93.5864, "matched_fragments": 2123, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia polaris", "strain": "strain=RP-4-7", "accession": "GCA_012927345.1", "taxid": 2728848, "species_taxid": 2728848, "relation_to_type": "type", "validated": true, "ani": 90.6289, "matched_fragments": 2027, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia solitsugae", "strain": "strain=1N", "accession": "GCA_013177695.1", "taxid": 2675748, "species_taxid": 2675748, "relation_to_type": "type", "validated": true, "ani": 90.2591, "matched_fragments": 1971, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 90.1993, "matched_fragments": 1975, "total_fragments": 2860, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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