{ "type": "genome", "identifier": "GCF_902859915.1", "organism": "Paraburkholderia ultramafica", "title": "Paraburkholderia ultramafica", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_902859915.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6678269", "wgs_master": "CADIKK000000000.1", "refseq_category": "reference genome", "taxid": "1544867", "species_taxid": "1544867", "organism_name": "Paraburkholderia ultramafica", "infraspecific_name": "strain=LMG 28614", "isolate": "LMG 28614", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/05/07", "asm_name": "LMG 28614", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_902859915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/902/859/915/GCF_902859915.1_LMG_28614", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7890836", "genome_size_ungapped": "7890836", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "176", "contig_count": "176", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_902859915.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "7461", "protein_coding_gene_count": "6898", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-05-07", "dateModified": "2020-05-07", "datePublished": "2020-05-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Paraburkholderia ultramafica" ], "sample_taxid": [ "1544867" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "New Caledonia" ], "sample_host_location_id": [], "data_size": "2.201 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7890836", "Number of Sequences": "176", "Longest Sequences (bp)": "424817", "N50 (bp)": "188315", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.6", "Number of CDSs": "7198", "Average Protein Length": "298.9", "Coding Ratio (%)": "81.8", "Number of rRNAs": "2", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paraburkholderia ultramafica", "strain": "strain=LMG 28614", "accession": "GCA_902859915.1", "taxid": 1544867, "species_taxid": 1544867, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia ribeironis", "strain": "strain=STM 7296", "accession": "GCA_900019265.2", "taxid": 1247936, "species_taxid": 1247936, "relation_to_type": "type", "validated": true, "ani": 89.369, "matched_fragments": 1530, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia aromaticivorans", "strain": "strain=BN5", "accession": "GCA_002278075.1", "taxid": 2026199, "species_taxid": 2026199, "relation_to_type": "type", "validated": true, "ani": 87.6935, "matched_fragments": 1606, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia dipogonis", "strain": "strain=ICMP 19430", "accession": "GCA_004402975.1", "taxid": 1211383, "species_taxid": 1211383, "relation_to_type": "type", "validated": true, "ani": 87.672, "matched_fragments": 1610, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia nemoris", "strain": "strain=LMG 31836", "accession": "GCA_905221015.1", "taxid": 2793076, "species_taxid": 2793076, "relation_to_type": "type", "validated": true, "ani": 87.126, "matched_fragments": 1547, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia haematera", "strain": "strain=LMG 31837", "accession": "GCA_905220975.1", "taxid": 2793077, "species_taxid": 2793077, "relation_to_type": "type", "validated": true, "ani": 86.8918, "matched_fragments": 1495, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia domus", "strain": "strain=LMG 31832", "accession": "GCA_905220705.1", "taxid": 2793075, "species_taxid": 2793075, "relation_to_type": "type", "validated": true, "ani": 86.8844, "matched_fragments": 1513, "total_fragments": 2544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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