{ "type": "genome", "identifier": "GCF_903652925.1", "organism": "Achromobacter anxifer", "title": "Achromobacter anxifer", "description": "na", "data type": "Genome sequencing and assembly", "organization": "GHENT UNIVERSITY", "publication": [ {} ], "properties": { "assembly_accession": "GCF_903652925.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6647246", "wgs_master": "CAHLAR000000000.1", "refseq_category": "reference genome", "taxid": "1287737", "species_taxid": "1287737", "organism_name": "Achromobacter anxifer", "infraspecific_name": "strain=LMG 26857", "isolate": "LMG 26857", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/06/05", "asm_name": "LMG 26857", "asm_submitter": "GHENT UNIVERSITY", "gbrs_paired_asm": "GCA_903652925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/652/925/GCF_903652925.1_LMG_26857", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7212913", "genome_size_ungapped": "7212913", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "32", "contig_count": "32", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_903652925.1-RS_2024_05_05", "annotation_date": "2024-05-05", "total_gene_count": "6921", "protein_coding_gene_count": "6760", "non_coding_gene_count": "119", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-06-05", "dateModified": "2020-06-05", "datePublished": "2020-06-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter anxifer" ], "sample_taxid": [ "1287737" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.977 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7212913", "Number of Sequences": "32", "Longest Sequences (bp)": "1154056", "N50 (bp)": "486889", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.2", "Number of CDSs": "6821", "Average Protein Length": "318.2", "Coding Ratio (%)": "90.3", "Number of rRNAs": "3", "Number of tRNAs": "114", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter anxifer", "strain": "strain=LMG 26857", "accession": "GCA_903652925.1", "taxid": 1287737, "species_taxid": 1287737, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2389, "total_fragments": 2390, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter aegrifaciens", "strain": "strain=LMG 26852", "accession": "GCA_902859735.1", "taxid": 1287736, "species_taxid": 1287736, "relation_to_type": "type", "validated": true, "ani": 91.0489, "matched_fragments": 1844, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC13520", "accession": "GCA_900637265.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 89.3056, "matched_fragments": 1801, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=LMG 6003", "accession": "GCA_902859615.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 89.3011, "matched_fragments": 1808, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 89.2679, "matched_fragments": 1799, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=LMG 6003", "accession": "GCA_002209555.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 89.2576, "matched_fragments": 1799, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 88.5277, "matched_fragments": 1543, "total_fragments": 2390, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": 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