{ "type": "genome", "identifier": "GCF_903819335.1", "organism": "Flavobacterium panici", "title": "Flavobacterium panici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_903819335.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6952691", "wgs_master": "CAIJDE000000000.1", "refseq_category": "na", "taxid": "2654843", "species_taxid": "2654843", "organism_name": "Flavobacterium panici", "infraspecific_name": "na", "isolate": "PXU-55", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "CIP111646", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_903819335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/819/335/GCF_903819335.1_CIP111646", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5623477", "genome_size_ungapped": "5622192", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "74", "contig_count": "74", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_903819335.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4815", "protein_coding_gene_count": "4723", "non_coding_gene_count": "72", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium panici" ], "sample_taxid": [ "2654843" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.559 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5623477", "Number of Sequences": "74", "Longest Sequences (bp)": "534648", "N50 (bp)": "194525", "Gap Ratio (%)": "0.022851", "GCcontent (%)": "33.6", "Number of CDSs": "4711", "Average Protein Length": "345.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "0", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium panici", "strain": "", "accession": "GCA_903819335.1", "taxid": 2654843, "species_taxid": 2654843, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1845, "total_fragments": 1847, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 90.6967, "matched_fragments": 1388, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=ATCC 17061", "accession": "GCA_002221975.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 86.0854, "matched_fragments": 1299, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium johnsoniae", "strain": "strain=DSM 2064", "accession": "GCA_900142355.1", "taxid": 986, "species_taxid": 986, "relation_to_type": "type", "validated": true, "ani": 86.052, "matched_fragments": 1331, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 84.7139, "matched_fragments": 1048, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 84.4049, "matched_fragments": 1058, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 84.1649, "matched_fragments": 1262, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=DSM 24724", "accession": "GCA_900142685.1", "taxid": 946677, 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"type", "validated": true, "ani": 83.4134, "matched_fragments": 1233, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 83.3977, "matched_fragments": 1161, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 83.3824, "matched_fragments": 1228, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium nitrogenifigens", "strain": "strain=NXU-44", "accession": "GCA_003254565.1", "taxid": 1617283, "species_taxid": 1617283, "relation_to_type": "type", "validated": true, 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"total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium reichenbachii", "strain": "strain=DSM 21791", "accession": "GCA_002217435.1", "taxid": 362418, "species_taxid": 362418, "relation_to_type": "type", "validated": true, "ani": 83.0956, "matched_fragments": 1138, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 83.0746, "matched_fragments": 1131, "total_fragments": 1847, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium ustbae", "strain": "strain=T13", "accession": "GCA_003946915.1", "taxid": 2488790, "species_taxid": 2488790, "relation_to_type": "type", "validated": true, "ani": 82.8629, "matched_fragments": 1109, "total_fragments": 1847, "ani_threshold": 95, 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