{ "type": "genome", "identifier": "GCF_903819435.1", "organism": "Flavobacterium salmonis", "title": "Flavobacterium salmonis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_903819435.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6952714", "wgs_master": "CAIJDP000000000.1", "refseq_category": "reference genome", "taxid": "2654844", "species_taxid": "2654844", "organism_name": "Flavobacterium salmonis", "infraspecific_name": "strain=CIP 111411", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "CIP111411", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_903819435.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/819/435/GCF_903819435.1_CIP111411", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5863820", "genome_size_ungapped": "5863235", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "138", "contig_count": "138", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_903819435.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5078", "protein_coding_gene_count": "4942", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium salmonis" ], "sample_taxid": [ "2654844" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.632 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5863820", "Number of Sequences": "138", "Longest Sequences (bp)": "606021", "N50 (bp)": "280198", "Gap Ratio (%)": "0.009976", "GCcontent (%)": "33.7", "Number of CDSs": "4901", "Average Protein Length": "343.1", "Coding Ratio (%)": "86.0", "Number of rRNAs": "3", "Number of tRNAs": "59", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1911, "total_fragments": 1915, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 86.3712, "matched_fragments": 1288, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheongpyeongense", "strain": "strain=IMCC34759", "accession": "GCA_003202435.1", "taxid": 2212651, "species_taxid": 2212651, "relation_to_type": "type", "validated": true, "ani": 85.9943, "matched_fragments": 1207, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 85.2257, "matched_fragments": 1196, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=THG-AG6.4", "accession": "GCA_010645075.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 84.7585, "matched_fragments": 1272, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=CGMCC 1.16060", "accession": "GCA_014644395.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 84.7425, "matched_fragments": 1267, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 82.1286, "matched_fragments": 1041, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 82.1257, "matched_fragments": 1063, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidimaris", "strain": "strain=DSM 15937", "accession": "GCA_002217275.1", "taxid": 262320, "species_taxid": 262320, "relation_to_type": "type", "validated": true, "ani": 82.1149, "matched_fragments": 952, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 81.939, "matched_fragments": 959, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 81.9057, "matched_fragments": 956, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 81.7996, "matched_fragments": 988, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 81.6474, "matched_fragments": 965, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 18293", "accession": "GCA_002217195.1", "taxid": 362413, "species_taxid": 362413, "relation_to_type": "type", "validated": true, "ani": 81.6318, "matched_fragments": 930, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 81.6109, "matched_fragments": 835, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.46, "matched_fragments": 862, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium collinsii", "strain": "", "accession": "GCA_902804485.1", "taxid": 1114861, "species_taxid": 1114861, "relation_to_type": "type", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000282055.1", "gtdb_species": "s__Flavobacterium sp000282055", "ani": 83.1616, "matched_fragments": 1102, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009707955.1", "gtdb_species": "s__Flavobacterium sp009707955", "ani": 82.314, "matched_fragments": 1005, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", 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"status": "-" }, { "accession": "GCF_902804485.1", "gtdb_species": "s__Flavobacterium collinsii", "ani": 81.286, "matched_fragments": 800, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015182285.1", "gtdb_species": "s__Flavobacterium sp015182285", "ani": 81.0728, "matched_fragments": 921, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { 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