{ "type": "genome", "identifier": "GCF_903819445.1", "organism": "Flavobacterium chungangense", "title": "Flavobacterium chungangense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "INSTITUT PASTEUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_903819445.1", "bioproject": "PRJNA224116", "biosample": "SAMEA6952715", "wgs_master": "CAIJDO000000000.1", "refseq_category": "na", "taxid": "554283", "species_taxid": "554283", "organism_name": "Flavobacterium chungangense", "infraspecific_name": "strain=CIP 110025", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2020/07/20", "asm_name": "CIP110025", "asm_submitter": "INSTITUT PASTEUR", "gbrs_paired_asm": "GCA_903819445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/903/819/445/GCF_903819445.1_CIP110025", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5508144", "genome_size_ungapped": "5507862", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "384", "contig_count": "384", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_903819445.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4765", "protein_coding_gene_count": "4656", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2020-07-20", "dateModified": "2020-07-20", "datePublished": "2020-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium chungangense" ], "sample_taxid": [ "554283" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [], "sample_host_location_id": [], "data_size": "1.542 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5508144", "Number of Sequences": "384", "Longest Sequences (bp)": "142202", "N50 (bp)": "29963", "Gap Ratio (%)": "0.005120", "GCcontent (%)": "33.9", "Number of CDSs": "4410", "Average Protein Length": "348.2", "Coding Ratio (%)": "83.6", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium salmonis", "strain": "strain=CIP 111411", "accession": "GCA_903819435.1", "taxid": 2654844, "species_taxid": 2654844, "relation_to_type": "type", "validated": true, "ani": 95.2488, "matched_fragments": 1409, "total_fragments": 1662, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium hydrophilum", "strain": "strain=IMCC34758", "accession": "GCA_003202405.1", "taxid": 2211445, "species_taxid": 2211445, "relation_to_type": "type", "validated": true, "ani": 87.5662, "matched_fragments": 1165, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheongpyeongense", "strain": "strain=IMCC34759", "accession": "GCA_003202435.1", "taxid": 2212651, "species_taxid": 2212651, "relation_to_type": "type", "validated": true, "ani": 85.6828, "matched_fragments": 1107, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibisci", "strain": "strain=THG-HG1.4", "accession": "GCA_020026925.1", "taxid": 1914462, "species_taxid": 1914462, "relation_to_type": "type", "validated": true, "ani": 85.4504, "matched_fragments": 1090, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=THG-AG6.4", "accession": "GCA_010645075.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 85.1418, "matched_fragments": 1197, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium limi", "strain": "strain=CGMCC 1.16060", "accession": "GCA_014644395.1", "taxid": 2045105, "species_taxid": 2045105, "relation_to_type": "type", "validated": true, "ani": 85.0918, "matched_fragments": 1197, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium fluviatile", "strain": "strain=TAPY14", "accession": "GCA_010645065.1", "taxid": 1862387, "species_taxid": 1862387, "relation_to_type": "type", "validated": true, "ani": 84.9379, "matched_fragments": 991, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 82.4245, "matched_fragments": 979, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=ATCC 19366", "accession": "GCA_002217365.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 82.4127, "matched_fragments": 972, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=LMG 26360", "accession": "GCA_001602525.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 82.2616, "matched_fragments": 869, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidimaris", "strain": "strain=DSM 15937", "accession": "GCA_002217275.1", "taxid": 262320, "species_taxid": 262320, "relation_to_type": "type", "validated": true, "ani": 82.2112, "matched_fragments": 872, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium chilense", "strain": "strain=DSM 24724", "accession": "GCA_900142685.1", "taxid": 946677, "species_taxid": 946677, "relation_to_type": "type", "validated": true, "ani": 82.1633, "matched_fragments": 883, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 82.0257, "matched_fragments": 907, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.9925, "matched_fragments": 869, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.9828, "matched_fragments": 883, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 81.9743, "matched_fragments": 793, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 18293", "accession": "GCA_002217195.1", "taxid": 362413, "species_taxid": 362413, "relation_to_type": "type", "validated": true, "ani": 81.8694, "matched_fragments": 887, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oncorhynchi", "strain": "strain=CCUG 59446", "accession": "GCA_002217355.1", "taxid": 728056, "species_taxid": 728056, "relation_to_type": "type", "validated": true, "ani": 81.8187, "matched_fragments": 791, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 81.6107, "matched_fragments": 836, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium endoglycinae", "strain": "strain=BB8", "accession": "GCA_017352115.1", "taxid": 2816357, "species_taxid": 2816357, "relation_to_type": "type", "validated": true, "ani": 81.4189, "matched_fragments": 871, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.1394, "matched_fragments": 914, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 77.1774, "matched_fragments": 169, "total_fragments": 1662, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000735715.2", "gtdb_species": "s__Flavobacterium chungangense", "ani": 99.9799, "matched_fragments": 1646, "total_fragments": 1662, 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